RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 PDE4DQ08499 809 aa7.25□□□□□ -1.25
CD44-225ENST00000527326 SKOR2Q2VWA4 1001 aaPredicted RBP7.25□□□□□ -1.25
CD44-225ENST00000527326 CENPQQ7L2Z9 268 aaPredicted RBP7.25□□□□□ -1.25
CD44-225ENST00000527326 NUTM1Q86Y26 1132 aa7.25□□□□□ -1.25
CD44-225ENST00000527326 CYP4X1Q8N118 509 aa7.25□□□□□ -1.25
CD44-225ENST00000527326 EFCC1Q9HA90 598 aa7.25□□□□□ -1.25
CD44-225ENST00000527326 FAM217BQ9NTX9 383 aaPredicted RBP7.25□□□□□ -1.25
CD44-225ENST00000527326 MAP3K1Q13233 1512 aa7.25□□□□□ -1.25
CD44-225ENST00000527326 ARHGEF11O15085 1522 aa7.24□□□□□ -1.25
CD44-225ENST00000527326 HOXA2O43364 376 aa7.24□□□□□ -1.25
CD44-225ENST00000527326 MMP16P51512 607 aa7.24□□□□□ -1.25
CD44-225ENST00000527326 PDE3BQ13370 1112 aa7.24□□□□□ -1.25
CD44-225ENST00000527326 CCDC184Q52MB2 194 aa7.24□□□□□ -1.25
CD44-225ENST00000527326 TICAM2Q86XR7 235 aa7.24□□□□□ -1.25
CD44-225ENST00000527326 HIRIP3Q9BW71 556 aaPredicted RBP7.24□□□□□ -1.25
CD44-225ENST00000527326 KIF3AQ9Y496 699 aa7.24□□□□□ -1.25
CD44-225ENST00000527326 MYOM3Q5VTT5 1437 aa7.24□□□□□ -1.25
CD44-225ENST00000527326 SYNJ1O43426 1573 aa7.24□□□□□ -1.25
CD44-225ENST00000527326 IBTKQ9P2D0 1353 aaPredicted RBP7.23□□□□□ -1.25
CD44-225ENST00000527326 URB2Q14146 1524 aaKnown RBP7.23□□□□□ -1.25
CD44-225ENST00000527326 GUCA2AQ02747 115 aa7.23□□□□□ -1.25
CD44-225ENST00000527326 CC2D1BQ5T0F9 858 aaKnown RBP7.23□□□□□ -1.25
CD44-225ENST00000527326 CCDC24Q8N4L8 307 aa7.23□□□□□ -1.25
CD44-225ENST00000527326 TMC1Q8TDI8 760 aa7.23□□□□□ -1.25
CD44-225ENST00000527326 TIGD1Q96MW7 591 aa7.23□□□□□ -1.25
CD44-225ENST00000527326 KCNG1Q9UIX4 513 aa7.23□□□□□ -1.25
CD44-225ENST00000527326 RCAN3Q9UKA8 241 aa7.23□□□□□ -1.25
CD44-225ENST00000527326 NOL7Q9UMY1 257 aaKnown RBP7.23□□□□□ -1.25
CD44-225ENST00000527326 NCOA1Q15788 1441 aa7.23□□□□□ -1.25
CD44-225ENST00000527326 POLR1AO95602 1720 aaPredicted RBP7.23□□□□□ -1.25
CD44-225ENST00000527326 KDM2BQ8NHM5 1336 aa7.23□□□□□ -1.25
CD44-225ENST00000527326 ST8SIA5O15466 376 aa7.22□□□□□ -1.25
CD44-225ENST00000527326 DXOO77932 396 aaKnown RBP7.22□□□□□ -1.25
CD44-225ENST00000527326 RBM25P49756 843 aaKnown RBP7.22□□□□□ -1.25
CD44-225ENST00000527326 HMGN5P82970 282 aaKnown RBP7.22□□□□□ -1.25
CD44-225ENST00000527326 ZNF771Q7L3S4 317 aaPredicted RBP7.22□□□□□ -1.25
CD44-225ENST00000527326 CREBRFQ8IUR6 639 aa7.22□□□□□ -1.25
CD44-225ENST00000527326 MYRIPQ8NFW9 859 aa7.22□□□□□ -1.25
CD44-225ENST00000527326 PRIMPOLQ96LW4 560 aa7.22□□□□□ -1.25
CD44-225ENST00000527326 REPIN1Q9BWE0 567 aaKnown RBP7.22□□□□□ -1.25
CD44-225ENST00000527326 CHMP5Q9NZZ3 219 aa7.22□□□□□ -1.25
CD44-225ENST00000527326 CHD1O14646 1710 aa7.21□□□□□ -1.25
CD44-225ENST00000527326 EIF4G3O43432 1585 aaKnown RBP7.21□□□□□ -1.25
CD44-225ENST00000527326 TTC24A2A3L6 582 aaPredicted RBP7.21□□□□□ -1.26
CD44-225ENST00000527326 POTECB2RU33 542 aa7.21□□□□□ -1.26
CD44-225ENST00000527326 HMGB1P09429 215 aaKnown RBP7.21□□□□□ -1.26
CD44-225ENST00000527326 SSTR3P32745 418 aaPredicted RBP7.21□□□□□ -1.26
CD44-225ENST00000527326 GTF2F1P35269 517 aaKnown RBP eCLIP7.21□□□□□ -1.26
CD44-225ENST00000527326 KCNJ4P48050 445 aa7.21□□□□□ -1.26
CD44-225ENST00000527326 TRIM32Q13049 653 aa7.21□□□□□ -1.26
CD44-225ENST00000527326 SYMPKQ92797 1274 aaKnown RBP7.21□□□□□ -1.26
CD44-225ENST00000527326 FEZ1Q99689 392 aa7.21□□□□□ -1.26
CD44-225ENST00000527326 TOR4AQ9NXH8 423 aa7.21□□□□□ -1.26
CD44-225ENST00000527326 CALCOCO1Q9P1Z2 691 aa7.21□□□□□ -1.26
CD44-225ENST00000527326 CCDC7Q96M83 1385 aa7.2□□□□□ -1.26
CD44-225ENST00000527326 E9PSI1 815 aa7.2□□□□□ -1.26
CD44-225ENST00000527326 TULP2O00295 520 aa7.2□□□□□ -1.26
CD44-225ENST00000527326 CLSTN1O94985 981 aa7.2□□□□□ -1.26
CD44-225ENST00000527326 CBX1P83916 185 aa7.2□□□□□ -1.26
CD44-225ENST00000527326 TTLL12Q14166 644 aaPredicted RBP7.2□□□□□ -1.26
CD44-225ENST00000527326 CTR9Q6PD62 1173 aa7.2□□□□□ -1.26
CD44-225ENST00000527326 ZNF775Q96BV0 537 aaPredicted RBP7.2□□□□□ -1.26
CD44-225ENST00000527326 FAM117AQ9C073 453 aa7.2□□□□□ -1.26
CD44-225ENST00000527326 GZF1Q9H116 711 aaPredicted RBP7.2□□□□□ -1.26
CD44-225ENST00000527326 AAASQ9NRG9 546 aa7.2□□□□□ -1.26
CD44-225ENST00000527326 CCDC9Q9Y3X0 531 aaKnown RBP7.2□□□□□ -1.26
CD44-225ENST00000527326 ZMYM3Q14202 1370 aa7.2□□□□□ -1.26
CD44-225ENST00000527326 RUSC2Q8N2Y8 1516 aa7.19□□□□□ -1.26
CD44-225ENST00000527326 PATL2C9JE40 543 aaKnown RBP7.19□□□□□ -1.26
CD44-225ENST00000527326 WNT7AO00755 349 aa7.19□□□□□ -1.26
CD44-225ENST00000527326 NASPP49321 788 aaPredicted RBP7.19□□□□□ -1.26
CD44-225ENST00000527326 EIF4G2P78344 907 aaKnown RBP eCLIP7.19□□□□□ -1.26
CD44-225ENST00000527326 SLKQ9H2G2 1235 aaPredicted RBP7.19□□□□□ -1.26
CD44-225ENST00000527326 SLC52A1Q9NWF4 448 aa7.19□□□□□ -1.26
CD44-225ENST00000527326 ZKSCAN5Q9Y2L8 839 aa7.19□□□□□ -1.26
CD44-225ENST00000527326 DNMBPQ6XZF7 1577 aa7.19□□□□□ -1.26
CD44-225ENST00000527326 ROCK2O75116 1388 aaKnown RBP7.19□□□□□ -1.26
CD44-225ENST00000527326 ARAP1Q96P48 1450 aa7.18□□□□□ -1.26
CD44-225ENST00000527326 HSP90AB1P08238 724 aaKnown RBP7.18□□□□□ -1.26
CD44-225ENST00000527326 FDX1P10109 184 aa7.18□□□□□ -1.26
CD44-225ENST00000527326 HSPA5P11021 654 aaKnown RBP7.18□□□□□ -1.26
CD44-225ENST00000527326 MFAP1P55081 439 aaKnown RBP7.18□□□□□ -1.26
CD44-225ENST00000527326 NBPF20Q3BBV1 942 aa7.18□□□□□ -1.26
CD44-225ENST00000527326 PLCD4Q9BRC7 762 aa7.18□□□□□ -1.26
CD44-225ENST00000527326 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.18□□□□□ -1.26
CD44-225ENST00000527326 TOPBP1Q92547 1522 aa7.17□□□□□ -1.26
CD44-225ENST00000527326 KDM5BQ9UGL1 1544 aa7.17□□□□□ -1.26
CD44-225ENST00000527326 C6orf229H3BNL8 230 aa7.17□□□□□ -1.26
CD44-225ENST00000527326 JUNDP17535 347 aa7.17□□□□□ -1.26
CD44-225ENST00000527326 AEBP1Q8IUX7 1158 aa7.17□□□□□ -1.26
CD44-225ENST00000527326 PDCL2Q8N4E4 241 aa7.17□□□□□ -1.26
CD44-225ENST00000527326 SNIP1Q8TAD8 396 aaKnown RBP7.17□□□□□ -1.26
CD44-225ENST00000527326 MRGPRX2Q96LB1 330 aa7.17□□□□□ -1.26
CD44-225ENST00000527326 POLR3GLQ9BT43 218 aa7.17□□□□□ -1.26
CD44-225ENST00000527326 CARD10Q9BWT7 1032 aa7.17□□□□□ -1.26
CD44-225ENST00000527326 UPF2Q9HAU5 1272 aaKnown RBP7.17□□□□□ -1.26
CD44-225ENST00000527326 OGFRQ9NZT2 677 aa7.17□□□□□ -1.26
CD44-225ENST00000527326 CCDC39Q9UFE4 941 aa7.17□□□□□ -1.26
CD44-225ENST00000527326 LRPPRCP42704 1394 aaKnown RBP7.17□□□□□ -1.26
CD44-225ENST00000527326 KIAA1107Q9UPP5 1409 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms