RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SH3BP5LQ7L8J4 393 aa7.35□□□□□ -1.23
USP54-217ENST00000498213 SLC10A4Q96EP9 437 aa7.35□□□□□ -1.23
USP54-217ENST00000498213 HMX1Q9NP08 348 aaPredicted RBP7.35□□□□□ -1.23
USP54-217ENST00000498213 MAPKBP1O60336 1514 aa7.35□□□□□ -1.23
USP54-217ENST00000498213 VASH1Q7L8A9 365 aaPredicted RBP7.34□□□□□ -1.23
USP54-217ENST00000498213 PRG4Q92954 1404 aaPredicted RBP7.34□□□□□ -1.23
USP54-217ENST00000498213 APBB1O00213 710 aa7.33□□□□□ -1.24
USP54-217ENST00000498213 PPFIA3O75145 1194 aa7.33□□□□□ -1.24
USP54-217ENST00000498213 SH3RF1Q7Z6J0 888 aa7.33□□□□□ -1.24
USP54-217ENST00000498213 LINC00528Q8N1L1 170 aa7.33□□□□□ -1.24
USP54-217ENST00000498213 MEIOBQ8N635 442 aa7.33□□□□□ -1.24
USP54-217ENST00000498213 FSHRP23945 695 aa7.32□□□□□ -1.24
USP54-217ENST00000498213 EPS8L1Q8TE68 723 aa7.32□□□□□ -1.24
USP54-217ENST00000498213 TOP2BQ02880 1626 aa7.31□□□□□ -1.24
USP54-217ENST00000498213 ERFEQ4G0M1 354 aa7.31□□□□□ -1.24
USP54-217ENST00000498213 TRMT44Q8IYL2 757 aaKnown RBP7.31□□□□□ -1.24
USP54-217ENST00000498213 C1QTNF2Q9BXJ5 285 aa7.31□□□□□ -1.24
USP54-217ENST00000498213 CDV3Q9UKY7 258 aaKnown RBP7.31□□□□□ -1.24
USP54-217ENST00000498213 GPSM3Q9Y4H4 160 aa7.31□□□□□ -1.24
USP54-217ENST00000498213 SOS2Q07890 1332 aaPredicted RBP7.3□□□□□ -1.24
USP54-217ENST00000498213 BANK1Q8NDB2 785 aa7.3□□□□□ -1.24
USP54-217ENST00000498213 DNMT3LQ9UJW3 386 aa7.3□□□□□ -1.24
USP54-217ENST00000498213 MAP4K5Q9Y4K4 846 aa7.3□□□□□ -1.24
USP54-217ENST00000498213 FGD5Q6ZNL6 1462 aa7.3□□□□□ -1.24
USP54-217ENST00000498213 TSEN34Q9BSV6 310 aaKnown RBP7.29□□□□□ -1.24
USP54-217ENST00000498213 EMILIN1Q9Y6C2 1016 aa7.29□□□□□ -1.24
USP54-217ENST00000498213 PRDM2Q13029 1718 aa7.29□□□□□ -1.24
USP54-217ENST00000498213 GRIN2AQ12879 1464 aa7.29□□□□□ -1.24
USP54-217ENST00000498213 TTBK1Q5TCY1 1321 aaPredicted RBP7.28□□□□□ -1.24
USP54-217ENST00000498213 NUP160Q12769 1436 aa7.28□□□□□ -1.24
USP54-217ENST00000498213 NBPF20Q3BBV1 942 aa7.28□□□□□ -1.24
USP54-217ENST00000498213 DZIP3Q86Y13 1208 aaKnown RBP7.28□□□□□ -1.24
USP54-217ENST00000498213 ADAM32Q8TC27 787 aa7.28□□□□□ -1.24
USP54-217ENST00000498213 PRM3Q9NNZ6 103 aa7.28□□□□□ -1.24
USP54-217ENST00000498213 CCDC88BA6NC98 1476 aa7.28□□□□□ -1.24
USP54-217ENST00000498213 TOP2AP11388 1531 aaKnown RBP7.27□□□□□ -1.25
USP54-217ENST00000498213 SUZ12Q15022 739 aaKnown RBP7.27□□□□□ -1.25
USP54-217ENST00000498213 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.27□□□□□ -1.25
USP54-217ENST00000498213 CCDC116Q8IYX3 515 aa7.27□□□□□ -1.25
USP54-217ENST00000498213 TRIM34Q9BYJ4 488 aa7.27□□□□□ -1.25
USP54-217ENST00000498213 NDUFB9Q9Y6M9 179 aa7.27□□□□□ -1.25
USP54-217ENST00000498213 PTPRMP28827 1452 aa7.27□□□□□ -1.25
USP54-217ENST00000498213 PCF11O94913 1555 aaKnown RBP7.26□□□□□ -1.25
USP54-217ENST00000498213 TTLL8A6PVC2 850 aa7.26□□□□□ -1.25
USP54-217ENST00000498213 KCTD15Q96SI1 283 aaPredicted RBP7.26□□□□□ -1.25
USP54-217ENST00000498213 SHROOM2Q13796 1616 aa7.26□□□□□ -1.25
USP54-217ENST00000498213 ADCY10Q96PN6 1610 aa7.26□□□□□ -1.25
USP54-217ENST00000498213 ZBBXA8MT70 800 aa7.25□□□□□ -1.25
USP54-217ENST00000498213 RAB15P59190 212 aa7.25□□□□□ -1.25
USP54-217ENST00000498213 DHX9Q08211 1270 aaKnown RBP7.25□□□□□ -1.25
USP54-217ENST00000498213 KCNMA1Q12791 1236 aa7.25□□□□□ -1.25
USP54-217ENST00000498213 GJD4Q96KN9 370 aaPredicted RBP7.25□□□□□ -1.25
USP54-217ENST00000498213 PGPEP1Q9NXJ5 209 aa7.25□□□□□ -1.25
USP54-217ENST00000498213 ZNF330Q9Y3S2 320 aaPredicted RBP7.25□□□□□ -1.25
USP54-217ENST00000498213 WDR97A6NE52 1622 aa7.25□□□□□ -1.25
USP54-217ENST00000498213 FIGNL2A6NMB9 653 aa7.24□□□□□ -1.25
USP54-217ENST00000498213 PTSQ03393 145 aa7.24□□□□□ -1.25
USP54-217ENST00000498213 GPR161Q8N6U8 529 aaKnown RBP7.24□□□□□ -1.25
USP54-217ENST00000498213 MTMR14Q8NCE2 650 aa7.24□□□□□ -1.25
USP54-217ENST00000498213 CNTNAP3BQ96NU0 1288 aa7.24□□□□□ -1.25
USP54-217ENST00000498213 CNTNAP3Q9BZ76 1288 aa7.24□□□□□ -1.25
USP54-217ENST00000498213 SNRKQ9NRH2 765 aa7.24□□□□□ -1.25
USP54-217ENST00000498213 PCDHB9Q9Y5E1 797 aa7.24□□□□□ -1.25
USP54-217ENST00000498213 PPRC1Q5VV67 1664 aaKnown RBP7.23□□□□□ -1.25
USP54-217ENST00000498213 KRT76Q01546 638 aa7.23□□□□□ -1.25
USP54-217ENST00000498213 PPP1R26Q5T8A7 1209 aaPredicted RBP7.23□□□□□ -1.25
USP54-217ENST00000498213 KCTD17Q8N5Z5 321 aa7.23□□□□□ -1.25
USP54-217ENST00000498213 ZNF592Q92610 1267 aa7.23□□□□□ -1.25
USP54-217ENST00000498213 TRIM52Q96A61 297 aa7.23□□□□□ -1.25
USP54-217ENST00000498213 CBLBQ13191 982 aa7.22□□□□□ -1.25
USP54-217ENST00000498213 OCSTAMPQ9BR26 566 aa7.22□□□□□ -1.25
USP54-217ENST00000498213 PBRM1Q86U86 1689 aa7.22□□□□□ -1.25
USP54-217ENST00000498213 ASXL2Q76L83 1435 aa7.21□□□□□ -1.25
USP54-217ENST00000498213 FBXO45P0C2W1 286 aa7.21□□□□□ -1.26
USP54-217ENST00000498213 GSK3AP49840 483 aa7.21□□□□□ -1.26
USP54-217ENST00000498213 INTS6LQ5JSJ4 861 aaKnown RBP7.21□□□□□ -1.26
USP54-217ENST00000498213 COL25A1Q9BXS0 654 aaPredicted RBP7.21□□□□□ -1.26
USP54-217ENST00000498213 SPINT1O43278 529 aa7.2□□□□□ -1.26
USP54-217ENST00000498213 NR1H3Q13133 447 aa7.2□□□□□ -1.26
USP54-217ENST00000498213 Q6ZVU0 165 aa7.2□□□□□ -1.26
USP54-217ENST00000498213 TMEM151AQ8N4L1 468 aa7.2□□□□□ -1.26
USP54-217ENST00000498213 CCDC155Q8N6L0 562 aa7.2□□□□□ -1.26
USP54-217ENST00000498213 ADAMTS8Q9UP79 889 aa7.2□□□□□ -1.26
USP54-217ENST00000498213 RNF225M0QZC1 329 aaPredicted RBP7.19□□□□□ -1.26
USP54-217ENST00000498213 GDF11O95390 407 aa7.19□□□□□ -1.26
USP54-217ENST00000498213 RASSF7Q02833 373 aa7.19□□□□□ -1.26
USP54-217ENST00000498213 NANOS1Q8WY41 292 aaKnown RBP7.19□□□□□ -1.26
USP54-217ENST00000498213 ARID4BQ4LE39 1312 aaPredicted RBP7.19□□□□□ -1.26
USP54-217ENST00000498213 MCCD1P59942 119 aaPredicted RBP7.18□□□□□ -1.26
USP54-217ENST00000498213 TBC1D2BQ9UPU7 963 aa7.18□□□□□ -1.26
USP54-217ENST00000498213 KIF21BO75037 1637 aa7.18□□□□□ -1.26
USP54-217ENST00000498213 PLB1Q6P1J6 1458 aa7.17□□□□□ -1.26
USP54-217ENST00000498213 TEX14Q8IWB6 1497 aa7.17□□□□□ -1.26
USP54-217ENST00000498213 GLI2P10070 1586 aa7.17□□□□□ -1.26
USP54-217ENST00000498213 SLC35F4A4IF30 521 aa7.17□□□□□ -1.26
USP54-217ENST00000498213 RNF20Q5VTR2 975 aa7.17□□□□□ -1.26
USP54-217ENST00000498213 SEPT12Q8IYM1 358 aa7.17□□□□□ -1.26
USP54-217ENST00000498213 SVOPQ8N4V2 548 aa7.17□□□□□ -1.26
USP54-217ENST00000498213 AGBL1Q96MI9 1066 aa7.17□□□□□ -1.26
USP54-217ENST00000498213 CUX1P39880 1505 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms