RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 GMLQ99445 158 aa8.63□□□□□ -1.03
BRCA1-224ENST00000497488 PIF1Q9H611 641 aa8.63□□□□□ -1.03
BRCA1-224ENST00000497488 BCL2L12Q9HB09 334 aa8.63□□□□□ -1.03
BRCA1-224ENST00000497488 XPCQ01831 940 aaPredicted RBP8.62□□□□□ -1.03
BRCA1-224ENST00000497488 FMR1Q06787 632 aaKnown RBP eCLIP8.62□□□□□ -1.03
BRCA1-224ENST00000497488 SWT1Q5T5J6 900 aaKnown RBP8.62□□□□□ -1.03
BRCA1-224ENST00000497488 CC2D2BQ6DHV5 1058 aa8.62□□□□□ -1.03
BRCA1-224ENST00000497488 PSDA5PKW4 1024 aaPredicted RBP8.61□□□□□ -1.03
BRCA1-224ENST00000497488 TREHO43280 583 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 ITGAEP38570 1179 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 ATP6V1AP38606 617 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 FGD1P98174 961 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 NLGN1Q8N2Q7 840 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 SPACA7Q96KW9 195 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 FAM161BQ96MY7 647 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 MKNK1Q9BUB5 465 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 ACBD3Q9H3P7 528 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 MRS2Q9HD23 443 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 PARP2Q9UGN5 583 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 AXIN2Q9Y2T1 843 aa8.61□□□□□ -1.03
BRCA1-224ENST00000497488 F12P00748 615 aaPredicted RBP8.6□□□□□ -1.03
BRCA1-224ENST00000497488 RBL2Q08999 1139 aa8.6□□□□□ -1.03
BRCA1-224ENST00000497488 GNL2Q13823 731 aaKnown RBP8.6□□□□□ -1.03
BRCA1-224ENST00000497488 PPP4R3BQ5MIZ7 849 aa8.6□□□□□ -1.03
BRCA1-224ENST00000497488 TMC4Q7Z404 712 aa8.6□□□□□ -1.03
BRCA1-224ENST00000497488 RBM19Q9Y4C8 960 aaKnown RBP8.6□□□□□ -1.03
BRCA1-224ENST00000497488 PPME1Q9Y570 386 aa8.6□□□□□ -1.03
BRCA1-224ENST00000497488 PCDHB9Q9Y5E1 797 aa8.6□□□□□ -1.03
BRCA1-224ENST00000497488 SFI1A8K8P3 1242 aa8.59□□□□□ -1.03
BRCA1-224ENST00000497488 PRPF40AO75400 957 aaKnown RBP8.59□□□□□ -1.03
BRCA1-224ENST00000497488 PTPREP23469 700 aa8.59□□□□□ -1.03
BRCA1-224ENST00000497488 GTF2IP78347 998 aa8.59□□□□□ -1.03
BRCA1-224ENST00000497488 PTPROQ16827 1216 aa8.59□□□□□ -1.03
BRCA1-224ENST00000497488 TSGA10IPQ3SY00 556 aa8.59□□□□□ -1.03
BRCA1-224ENST00000497488 CCDC102BQ68D86 513 aa8.59□□□□□ -1.03
BRCA1-224ENST00000497488 CAPN12Q6ZSI9 719 aa8.59□□□□□ -1.03
BRCA1-224ENST00000497488 PMFBP1Q8TBY8 1022 aa8.59□□□□□ -1.03
BRCA1-224ENST00000497488 ZSWIM4Q9H7M6 989 aa8.59□□□□□ -1.03
BRCA1-224ENST00000497488 METTL14Q9HCE5 456 aaKnown RBP8.59□□□□□ -1.03
BRCA1-224ENST00000497488 GPSM3Q9Y4H4 160 aa8.59□□□□□ -1.03
BRCA1-224ENST00000497488 SORBS3O60504 671 aa8.58□□□□□ -1.04
BRCA1-224ENST00000497488 PTCD1O75127 700 aaKnown RBP8.58□□□□□ -1.04
BRCA1-224ENST00000497488 LDHBP07195 334 aaKnown RBP8.58□□□□□ -1.04
BRCA1-224ENST00000497488 NPR3P17342 541 aa8.58□□□□□ -1.04
BRCA1-224ENST00000497488 ZNF76P36508 570 aa8.58□□□□□ -1.04
BRCA1-224ENST00000497488 TNNI2P48788 182 aa8.58□□□□□ -1.04
BRCA1-224ENST00000497488 IGBP1P78318 339 aa8.58□□□□□ -1.04
BRCA1-224ENST00000497488 HELQQ8TDG4 1101 aa8.58□□□□□ -1.04
BRCA1-224ENST00000497488 KCNB2Q92953 911 aa8.58□□□□□ -1.04
BRCA1-224ENST00000497488 PSMD1Q99460 953 aa8.58□□□□□ -1.04
BRCA1-224ENST00000497488 DUSP9Q99956 384 aaKnown RBP8.58□□□□□ -1.04
BRCA1-224ENST00000497488 hCG_2014768A0A024R1R8 64 aa8.57□□□□□ -1.04
BRCA1-224ENST00000497488 PLEKHD1A6NEE1 506 aa8.57□□□□□ -1.04
BRCA1-224ENST00000497488 CFHP08603 1231 aa8.57□□□□□ -1.04
BRCA1-224ENST00000497488 WEE1P30291 646 aa8.57□□□□□ -1.04
BRCA1-224ENST00000497488 DNAJA1P31689 397 aaKnown RBP8.57□□□□□ -1.04
BRCA1-224ENST00000497488 DAB2P98082 770 aa8.57□□□□□ -1.04
BRCA1-224ENST00000497488 PTK2Q05397 1052 aa8.57□□□□□ -1.04
BRCA1-224ENST00000497488 FKBP5Q13451 457 aaPredicted RBP8.57□□□□□ -1.04
BRCA1-224ENST00000497488 TPCN2Q8NHX9 752 aa8.57□□□□□ -1.04
BRCA1-224ENST00000497488 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.57□□□□□ -1.04
BRCA1-224ENST00000497488 LGR5O75473 907 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 FAM13AO94988 1023 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 PSEN2P49810 448 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 DSC3Q14574 896 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 TCEAL1Q15170 157 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 PROX2Q3B8N5 592 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 SOGA3Q5TF21 947 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 OCSTAMPQ9BR26 566 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 MAP10Q9P2G4 905 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 VTI1BQ9UEU0 232 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 SUGT1Q9Y2Z0 365 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 RIPOR2Q9Y4F9 1068 aa8.56□□□□□ -1.04
BRCA1-224ENST00000497488 NDUFB5O43674 189 aa8.55□□□□□ -1.04
BRCA1-224ENST00000497488 PBX2P40425 430 aa8.55□□□□□ -1.04
BRCA1-224ENST00000497488 Q3C1V9 767 aa8.55□□□□□ -1.04
BRCA1-224ENST00000497488 DMRTA1Q5VZB9 504 aa8.55□□□□□ -1.04
BRCA1-224ENST00000497488 ZNF746Q6NUN9 644 aaPredicted RBP8.55□□□□□ -1.04
BRCA1-224ENST00000497488 PPP1R18Q6NYC8 613 aa8.55□□□□□ -1.04
BRCA1-224ENST00000497488 COL26A1Q96A83 441 aa8.55□□□□□ -1.04
BRCA1-224ENST00000497488 HINFPQ9BQA5 517 aa8.55□□□□□ -1.04
BRCA1-224ENST00000497488 RNF19AQ9NV58 838 aa8.55□□□□□ -1.04
BRCA1-224ENST00000497488 DOLKQ9UPQ8 538 aa8.55□□□□□ -1.04
BRCA1-224ENST00000497488 LOC102724159A0A0B4J2E5 919 aa8.54□□□□□ -1.04
BRCA1-224ENST00000497488 ARHGAP33O14559 1287 aa8.54□□□□□ -1.04
BRCA1-224ENST00000497488 ARID5AQ03989 594 aa8.54□□□□□ -1.04
BRCA1-224ENST00000497488 PSMD2Q13200 908 aa8.54□□□□□ -1.04
BRCA1-224ENST00000497488 PWP2Q15269 919 aaKnown RBP8.54□□□□□ -1.04
BRCA1-224ENST00000497488 PDXDC2PQ6P474 469 aa8.54□□□□□ -1.04
BRCA1-224ENST00000497488 CCDC85AQ96PX6 553 aaPredicted RBP8.54□□□□□ -1.04
BRCA1-224ENST00000497488 PURBQ96QR8 312 aaKnown RBP8.54□□□□□ -1.04
BRCA1-224ENST00000497488 BRINP2Q9C0B6 783 aa8.54□□□□□ -1.04
BRCA1-224ENST00000497488 OSBPL2Q9H1P3 480 aa8.54□□□□□ -1.04
BRCA1-224ENST00000497488 KLHL42Q9P2K6 505 aa8.54□□□□□ -1.04
BRCA1-224ENST00000497488 MAPK8P45983 427 aa8.53□□□□□ -1.04
BRCA1-224ENST00000497488 SLC4A3P48751 1232 aa8.53□□□□□ -1.04
BRCA1-224ENST00000497488 LSM11P83369 360 aaKnown RBP eCLIP8.53□□□□□ -1.04
BRCA1-224ENST00000497488 PLCB3Q01970 1234 aa8.53□□□□□ -1.04
BRCA1-224ENST00000497488 OXLD1Q5BKU9 147 aa8.53□□□□□ -1.04
BRCA1-224ENST00000497488 MORN1Q5T089 497 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 149.1 ms