RNA–Protein interactions for RNA: ENST00000463622.6

SCFD1-204, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 1,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-204ENST00000463622 SOGA1O94964 1423 aa6.53□□□□□ -1.36
SCFD1-204ENST00000463622 TSEN34Q9BSV6 310 aaKnown RBP6.53□□□□□ -1.36
SCFD1-204ENST00000463622 POLA1P09884 1462 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-204ENST00000463622 DNMBPQ6XZF7 1577 aa6.53□□□□□ -1.36
SCFD1-204ENST00000463622 ADD1P35611 737 aaKnown RBP6.52□□□□□ -1.37
SCFD1-204ENST00000463622 DHX9Q08211 1270 aaKnown RBP6.52□□□□□ -1.37
SCFD1-204ENST00000463622 Q6ZVU0 165 aa6.52□□□□□ -1.37
SCFD1-204ENST00000463622 ZNF395Q9H8N7 513 aaPredicted RBP6.52□□□□□ -1.37
SCFD1-204ENST00000463622 DNMT3LQ9UJW3 386 aa6.52□□□□□ -1.37
SCFD1-204ENST00000463622 CLASP1Q7Z460 1538 aa6.52□□□□□ -1.37
SCFD1-204ENST00000463622 RAD54L2Q9Y4B4 1467 aa6.52□□□□□ -1.37
SCFD1-204ENST00000463622 SOS2Q07890 1332 aaPredicted RBP6.52□□□□□ -1.37
SCFD1-204ENST00000463622 TBC1D2BQ9UPU7 963 aa6.52□□□□□ -1.37
SCFD1-204ENST00000463622 NDUFB9Q9Y6M9 179 aa6.52□□□□□ -1.37
SCFD1-204ENST00000463622 ESPNB1AK53 854 aa6.51□□□□□ -1.37
SCFD1-204ENST00000463622 CYLDQ9NQC7 956 aa6.51□□□□□ -1.37
SCFD1-204ENST00000463622 LILRA1O75019 489 aa6.5□□□□□ -1.37
SCFD1-204ENST00000463622 NR1H3Q13133 447 aa6.5□□□□□ -1.37
SCFD1-204ENST00000463622 INSM2Q96T92 566 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-204ENST00000463622 ERBB4Q15303 1308 aa6.5□□□□□ -1.37
SCFD1-204ENST00000463622 SNAPC4Q5SXM2 1469 aa6.5□□□□□ -1.37
SCFD1-204ENST00000463622 TTLL8A6PVC2 850 aa6.5□□□□□ -1.37
SCFD1-204ENST00000463622 CTSOP43234 321 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-204ENST00000463622 SLC16A10Q8TF71 515 aa6.5□□□□□ -1.37
SCFD1-204ENST00000463622 GAPVD1Q14C86 1478 aa6.49□□□□□ -1.37
SCFD1-204ENST00000463622 CHD1O14646 1710 aa6.49□□□□□ -1.37
SCFD1-204ENST00000463622 SPINT1O43278 529 aa6.49□□□□□ -1.37
SCFD1-204ENST00000463622 KDF1Q8NAX2 398 aaPredicted RBP6.49□□□□□ -1.37
SCFD1-204ENST00000463622 MAGI1Q96QZ7 1491 aaPredicted RBP6.49□□□□□ -1.37
SCFD1-204ENST00000463622 H3BM21 787 aa6.48□□□□□ -1.37
SCFD1-204ENST00000463622 GMPRP36959 345 aa6.48□□□□□ -1.37
SCFD1-204ENST00000463622 POLMQ9NP87 494 aaPredicted RBP6.48□□□□□ -1.37
SCFD1-204ENST00000463622 SYNJ2O15056 1496 aa6.48□□□□□ -1.37
SCFD1-204ENST00000463622 GRIN2BQ13224 1484 aa6.48□□□□□ -1.37
SCFD1-204ENST00000463622 GDPD2Q9HCC8 539 aa6.47□□□□□ -1.37
SCFD1-204ENST00000463622 SYNJ1O43426 1573 aa6.47□□□□□ -1.37
SCFD1-204ENST00000463622 PPFIA3O75145 1194 aa6.46□□□□□ -1.37
SCFD1-204ENST00000463622 ADH1AP07327 375 aa6.46□□□□□ -1.37
SCFD1-204ENST00000463622 SCTRP47872 440 aa6.46□□□□□ -1.38
SCFD1-204ENST00000463622 PTSQ03393 145 aa6.46□□□□□ -1.38
SCFD1-204ENST00000463622 IRF5Q13568 498 aa6.46□□□□□ -1.38
SCFD1-204ENST00000463622 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.46□□□□□ -1.383e-6■□□□□ 9.1
SCFD1-204ENST00000463622 SEPT12Q8IYM1 358 aa6.46□□□□□ -1.38
SCFD1-204ENST00000463622 IRF7Q92985 503 aa6.46□□□□□ -1.38
SCFD1-204ENST00000463622 APBB1O00213 710 aa6.45□□□□□ -1.38
SCFD1-204ENST00000463622 SOCS7O14512 581 aa6.45□□□□□ -1.38
SCFD1-204ENST00000463622 WIPF1O43516 503 aa6.45□□□□□ -1.38
SCFD1-204ENST00000463622 ABL2P42684 1182 aa6.45□□□□□ -1.38
SCFD1-204ENST00000463622 PTGIRP43119 386 aa6.45□□□□□ -1.38
SCFD1-204ENST00000463622 PCDHB11Q9Y5F2 797 aa6.45□□□□□ -1.38
SCFD1-204ENST00000463622 PRDM2Q13029 1718 aa6.45□□□□□ -1.38
SCFD1-204ENST00000463622 VAC14Q08AM6 782 aa6.44□□□□□ -1.38
SCFD1-204ENST00000463622 NPAS3Q8IXF0 933 aa6.44□□□□□ -1.38
SCFD1-204ENST00000463622 WDR97A6NE52 1622 aa6.44□□□□□ -1.38
SCFD1-204ENST00000463622 FGD5Q6ZNL6 1462 aa6.44□□□□□ -1.38
SCFD1-204ENST00000463622 TSGA10IPQ3SY00 556 aa6.44□□□□□ -1.38
SCFD1-204ENST00000463622 ZNF330Q9Y3S2 320 aaPredicted RBP6.44□□□□□ -1.38
SCFD1-204ENST00000463622 FOXD4L5Q5VV16 416 aaPredicted RBP6.43□□□□□ -1.38
SCFD1-204ENST00000463622 RNF217Q8TC41 542 aa6.43□□□□□ -1.38
SCFD1-204ENST00000463622 CDCA7Q9BWT1 371 aaPredicted RBP6.43□□□□□ -1.38
SCFD1-204ENST00000463622 CEP126Q9P2H0 1117 aa6.43□□□□□ -1.38
SCFD1-204ENST00000463622 MCM6Q14566 821 aa6.42□□□□□ -1.38
SCFD1-204ENST00000463622 CCDC85AQ96PX6 553 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-204ENST00000463622 ATP5J2-PTCD1G3V325 749 aa6.42□□□□□ -1.38
SCFD1-204ENST00000463622 MEN1O00255 615 aa6.42□□□□□ -1.38
SCFD1-204ENST00000463622 ERVK-9P63128 1117 aa6.42□□□□□ -1.38
SCFD1-204ENST00000463622 RNF20Q5VTR2 975 aa6.42□□□□□ -1.38
SCFD1-204ENST00000463622 CC2D2BQ6DHV5 1058 aa6.42□□□□□ -1.38
SCFD1-204ENST00000463622 PRICKLE2Q7Z3G6 844 aa6.42□□□□□ -1.38
SCFD1-204ENST00000463622 CCDC155Q8N6L0 562 aa6.42□□□□□ -1.38
SCFD1-204ENST00000463622 PRM3Q9NNZ6 103 aa6.42□□□□□ -1.38
SCFD1-204ENST00000463622 A0A1W2PRU2 124 aa6.41□□□□□ -1.38
SCFD1-204ENST00000463622 RHOQP17081 205 aa6.41□□□□□ -1.38
SCFD1-204ENST00000463622 GPR161Q8N6U8 529 aaKnown RBP6.41□□□□□ -1.38
SCFD1-204ENST00000463622 MCCD1P59942 119 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-204ENST00000463622 INSM1Q01101 510 aaPredicted RBP6.4□□□□□ -1.38
SCFD1-204ENST00000463622 OSBPL3Q9H4L5 887 aa6.4□□□□□ -1.38
SCFD1-204ENST00000463622 RAB6BQ9NRW1 208 aa6.4□□□□□ -1.38
SCFD1-204ENST00000463622 CUX1P39880 1505 aa6.4□□□□□ -1.38
SCFD1-204ENST00000463622 NUP160Q12769 1436 aa6.4□□□□□ -1.38
SCFD1-204ENST00000463622 SLC35F4A4IF30 521 aa6.4□□□□□ -1.39
SCFD1-204ENST00000463622 SUPT5HO00267 1087 aaKnown RBP6.4□□□□□ -1.39
SCFD1-204ENST00000463622 FAM69CQ0P6D2 419 aa6.4□□□□□ -1.39
SCFD1-204ENST00000463622 POM121Q96HA1 1249 aa6.4□□□□□ -1.39
SCFD1-204ENST00000463622 ERCC6L2Q5T890 1561 aa6.4□□□□□ -1.39
SCFD1-204ENST00000463622 SENP3-EIF4A1A0A087X0R7 540 aa6.39□□□□□ -1.39
SCFD1-204ENST00000463622 EIF4G2P78344 907 aaKnown RBP eCLIP6.39□□□□□ -1.39
SCFD1-204ENST00000463622 ARHGEF10LQ9HCE6 1279 aa6.39□□□□□ -1.39
SCFD1-204ENST00000463622 STAU1O95793 577 aaKnown RBP6.38□□□□□ -1.39
SCFD1-204ENST00000463622 LORP23490 312 aaPredicted RBP6.38□□□□□ -1.39
SCFD1-204ENST00000463622 LYSMD3Q7Z3D4 306 aa6.38□□□□□ -1.39
SCFD1-204ENST00000463622 ESF1Q9H501 851 aaKnown RBP6.38□□□□□ -1.39
SCFD1-204ENST00000463622 COG6Q9Y2V7 657 aa6.38□□□□□ -1.39
SCFD1-204ENST00000463622 ABCA10Q8WWZ4 1543 aa6.38□□□□□ -1.39
SCFD1-204ENST00000463622 CDC14CA4D256 554 aa6.38□□□□□ -1.39
SCFD1-204ENST00000463622 VSIG8P0DPA2 414 aa6.38□□□□□ -1.39
SCFD1-204ENST00000463622 VWA5B2Q8N398 1253 aa6.38□□□□□ -1.39
SCFD1-204ENST00000463622 PHTF2Q8N3S3 785 aa6.38□□□□□ -1.39
SCFD1-204ENST00000463622 GRIN2AQ12879 1464 aa6.37□□□□□ -1.39
SCFD1-204ENST00000463622 ABCC10Q5T3U5 1492 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms