RNA–Protein interactions for RNA: ENST00000462658.1

UBE4B-204, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-204ENST00000462658 CCDC116Q8IYX3 515 aa11.76□□□□□ -0.53
UBE4B-204ENST00000462658 HPS1Q92902 700 aa11.76□□□□□ -0.53
UBE4B-204ENST00000462658 RNF20Q5VTR2 975 aa11.75□□□□□ -0.53
UBE4B-204ENST00000462658 SEPT12Q8IYM1 358 aa11.75□□□□□ -0.53
UBE4B-204ENST00000462658 ARID3AQ99856 593 aa11.75□□□□□ -0.53
UBE4B-204ENST00000462658 CDCA7Q9BWT1 371 aaPredicted RBP11.75□□□□□ -0.53
UBE4B-204ENST00000462658 TFIP11Q9UBB9 837 aaKnown RBP11.75□□□□□ -0.53
UBE4B-204ENST00000462658 PCDHB11Q9Y5F2 797 aa11.75□□□□□ -0.53
UBE4B-204ENST00000462658 PPP1R26Q5T8A7 1209 aaPredicted RBP11.74□□□□□ -0.53
UBE4B-204ENST00000462658 PLPP7Q8NBV4 271 aa11.74□□□□□ -0.53
UBE4B-204ENST00000462658 CCDC97Q96F63 343 aaPredicted RBP11.74□□□□□ -0.53
UBE4B-204ENST00000462658 PPP1R12CQ9BZL4 782 aa11.74□□□□□ -0.53
UBE4B-204ENST00000462658 PALM3A6NDB9 673 aaPredicted RBP11.73□□□□□ -0.53
UBE4B-204ENST00000462658 NRG2O14511 850 aaPredicted RBP11.73□□□□□ -0.53
UBE4B-204ENST00000462658 DEPDC4Q8N2C3 294 aa11.72□□□□□ -0.53
UBE4B-204ENST00000462658 CHIC2Q9UKJ5 165 aa11.72□□□□□ -0.53
UBE4B-204ENST00000462658 DOLKQ9UPQ8 538 aa11.72□□□□□ -0.53
UBE4B-204ENST00000462658 ATP9BO43861 1147 aa11.71□□□□□ -0.53
UBE4B-204ENST00000462658 OXLD1Q5BKU9 147 aa11.71□□□□□ -0.53
UBE4B-204ENST00000462658 TRAF7Q6Q0C0 670 aa11.71□□□□□ -0.53
UBE4B-204ENST00000462658 IRX2Q9BZI1 471 aaPredicted RBP11.71□□□□□ -0.53
UBE4B-204ENST00000462658 CHD1O14646 1710 aa11.71□□□□□ -0.54
UBE4B-204ENST00000462658 KIF27Q86VH2 1401 aa11.7□□□□□ -0.54
UBE4B-204ENST00000462658 TDRD9Q8NDG6 1382 aaKnown RBP11.7□□□□□ -0.54
UBE4B-204ENST00000462658 USP17L5A8MUK1 530 aa11.7□□□□□ -0.54
UBE4B-204ENST00000462658 WDR4P57081 412 aaKnown RBP11.7□□□□□ -0.54
UBE4B-204ENST00000462658 DHX9Q08211 1270 aaKnown RBP11.7□□□□□ -0.54
UBE4B-204ENST00000462658 ZNF784Q8NCA9 323 aaPredicted RBP11.7□□□□□ -0.54
UBE4B-204ENST00000462658 NFATC2IPQ8NCF5 419 aa11.7□□□□□ -0.54
UBE4B-204ENST00000462658 ITPKCQ96DU7 683 aa11.7□□□□□ -0.54
UBE4B-204ENST00000462658 KLF16Q9BXK1 252 aaPredicted RBP11.7□□□□□ -0.54
UBE4B-204ENST00000462658 ZFAND3Q9H8U3 227 aa11.7□□□□□ -0.54
UBE4B-204ENST00000462658 CYLDQ9NQC7 956 aa11.7□□□□□ -0.54
UBE4B-204ENST00000462658 SERPINA10Q9UK55 444 aa11.7□□□□□ -0.54
UBE4B-204ENST00000462658 ZIC2O95409 532 aaPredicted RBP11.69□□□□□ -0.54
UBE4B-204ENST00000462658 RFX1P22670 979 aa11.69□□□□□ -0.54
UBE4B-204ENST00000462658 SCTRP47872 440 aa11.69□□□□□ -0.54
UBE4B-204ENST00000462658 CFAP70Q5T0N1 1121 aa11.69□□□□□ -0.54
UBE4B-204ENST00000462658 MAFBQ9Y5Q3 323 aaPredicted RBP11.69□□□□□ -0.54
UBE4B-204ENST00000462658 EMILIN1Q9Y6C2 1016 aa11.69□□□□□ -0.54
UBE4B-204ENST00000462658 TIMP2P16035 220 aa11.68□□□□□ -0.54
UBE4B-204ENST00000462658 LMOD1P29536 600 aaPredicted RBP11.68□□□□□ -0.54
UBE4B-204ENST00000462658 PKDCCQ504Y2 493 aa11.68□□□□□ -0.54
UBE4B-204ENST00000462658 ABCA5Q8WWZ7 1642 aa11.68□□□□□ -0.54
UBE4B-204ENST00000462658 USP17L3A6NCW0 530 aa11.67□□□□□ -0.54
UBE4B-204ENST00000462658 USP17L4A6NCW7 530 aa11.67□□□□□ -0.54
UBE4B-204ENST00000462658 NCOA4Q13772 614 aa11.67□□□□□ -0.54
UBE4B-204ENST00000462658 MAP7D1Q3KQU3 841 aa11.67□□□□□ -0.54
UBE4B-204ENST00000462658 USP17L2Q6R6M4 530 aa11.67□□□□□ -0.54
UBE4B-204ENST00000462658 USP17L1Q7RTZ2 530 aa11.67□□□□□ -0.54
UBE4B-204ENST00000462658 PGPEP1Q9NXJ5 209 aa11.67□□□□□ -0.54
UBE4B-204ENST00000462658 ABCA10Q8WWZ4 1543 aa11.66□□□□□ -0.54
UBE4B-204ENST00000462658 PBRM1Q86U86 1689 aa11.66□□□□□ -0.54
UBE4B-204ENST00000462658 LILRA1O75019 489 aa11.66□□□□□ -0.54
UBE4B-204ENST00000462658 CBLBQ13191 982 aa11.66□□□□□ -0.54
UBE4B-204ENST00000462658 SNAPC4Q5SXM2 1469 aa11.65□□□□□ -0.54
UBE4B-204ENST00000462658 DGAT1O75907 488 aa11.65□□□□□ -0.54
UBE4B-204ENST00000462658 ADD1P35611 737 aaKnown RBP11.65□□□□□ -0.54
UBE4B-204ENST00000462658 MYT1Q01538 1121 aa11.65□□□□□ -0.54
UBE4B-204ENST00000462658 CCDC125Q86Z20 511 aa11.65□□□□□ -0.54
UBE4B-204ENST00000462658 LAPTM4AQ15012 233 aa11.64□□□□□ -0.55
UBE4B-204ENST00000462658 AVPP01185 164 aa11.63□□□□□ -0.55
UBE4B-204ENST00000462658 ERVK-9P63128 1117 aa11.63□□□□□ -0.55
UBE4B-204ENST00000462658 EML3Q32P44 896 aa11.63□□□□□ -0.55
UBE4B-204ENST00000462658 CDCA8Q53HL2 280 aa11.63□□□□□ -0.55
UBE4B-204ENST00000462658 CC2D2BQ6DHV5 1058 aa11.63□□□□□ -0.55
UBE4B-204ENST00000462658 PLEKHM2Q8IWE5 1019 aa11.63□□□□□ -0.55
UBE4B-204ENST00000462658 IGF1RP08069 1367 aa11.63□□□□□ -0.55
UBE4B-204ENST00000462658 CAPN5O15484 640 aaPredicted RBP11.62□□□□□ -0.55
UBE4B-204ENST00000462658 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.61□□□□□ -0.55
UBE4B-204ENST00000462658 USP4Q13107 963 aa11.61□□□□□ -0.55
UBE4B-204ENST00000462658 OSBPL3Q9H4L5 887 aa11.61□□□□□ -0.55
UBE4B-204ENST00000462658 MKRN1Q9UHC7 482 aaKnown RBP11.61□□□□□ -0.55
UBE4B-204ENST00000462658 GOLGA3Q08378 1498 aa11.6□□□□□ -0.55
UBE4B-204ENST00000462658 GAPVD1Q14C86 1478 aa11.6□□□□□ -0.55
UBE4B-204ENST00000462658 MYCP01106 439 aaPredicted RBP11.6□□□□□ -0.55
UBE4B-204ENST00000462658 AGBL1Q96MI9 1066 aa11.6□□□□□ -0.55
UBE4B-204ENST00000462658 NOD1Q9Y239 953 aa11.6□□□□□ -0.55
UBE4B-204ENST00000462658 GRIN2BQ13224 1484 aa11.59□□□□□ -0.55
UBE4B-204ENST00000462658 ST8SIA5O15466 376 aa11.59□□□□□ -0.55
UBE4B-204ENST00000462658 LZTS3O60299 673 aaPredicted RBP11.59□□□□□ -0.55
UBE4B-204ENST00000462658 KANK4Q5T7N3 995 aaPredicted RBP11.59□□□□□ -0.55
UBE4B-204ENST00000462658 ESF1Q9H501 851 aaKnown RBP11.59□□□□□ -0.55
UBE4B-204ENST00000462658 RIMBP3CA6NJZ7 1639 aa11.59□□□□□ -0.55
UBE4B-204ENST00000462658 RIMBP3BA6NNM3 1639 aa11.59□□□□□ -0.55
UBE4B-204ENST00000462658 KIF21BO75037 1637 aa11.59□□□□□ -0.55
UBE4B-204ENST00000462658 RIMBP3Q9UFD9 1639 aa11.59□□□□□ -0.55
UBE4B-204ENST00000462658 PRXQ9BXM0 1461 aa11.58□□□□□ -0.56
UBE4B-204ENST00000462658 Q6ZVU0 165 aa11.58□□□□□ -0.56
UBE4B-204ENST00000462658 CLASP1Q7Z460 1538 aa11.58□□□□□ -0.56
UBE4B-204ENST00000462658 MAGI1Q96QZ7 1491 aaPredicted RBP11.57□□□□□ -0.56
UBE4B-204ENST00000462658 STAU1O95793 577 aaKnown RBP11.57□□□□□ -0.56
UBE4B-204ENST00000462658 SIRT1Q96EB6 747 aa11.57□□□□□ -0.56
UBE4B-204ENST00000462658 RAPGEF2Q9Y4G8 1499 aa11.57□□□□□ -0.56
UBE4B-204ENST00000462658 CARMIL1Q5VZK9 1371 aa11.56□□□□□ -0.56
UBE4B-204ENST00000462658 TNIKQ9UKE5 1360 aa11.56□□□□□ -0.56
UBE4B-204ENST00000462658 AXIN1O15169 862 aa11.56□□□□□ -0.56
UBE4B-204ENST00000462658 ADH1AP07327 375 aa11.56□□□□□ -0.56
UBE4B-204ENST00000462658 ADAMTS12P58397 1594 aa11.56□□□□□ -0.56
UBE4B-204ENST00000462658 GTF2IP78347 998 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms