RNA–Protein interactions for RNA: ENST00000462658.1

UBE4B-204, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-204ENST00000462658 AEBP2Q6ZN18 517 aaPredicted RBP30.76■■■□□ 2.51
UBE4B-204ENST00000462658 CHIC1Q5VXU3 224 aa30.14■■■□□ 2.42
UBE4B-204ENST00000462658 PHF23Q9BUL5 403 aaPredicted RBP26.59■■□□□ 1.85
UBE4B-204ENST00000462658 SENP3Q9H4L4 574 aaPredicted RBP25.96■■□□□ 1.75
UBE4B-204ENST00000462658 PLPPR3Q6T4P5 718 aa24.52■■□□□ 1.52
UBE4B-204ENST00000462658 FOXD1Q16676 465 aa24.15■■□□□ 1.46
UBE4B-204ENST00000462658 PPP6R1Q9UPN7 881 aa23.42■■□□□ 1.34
UBE4B-204ENST00000462658 ADRA2BP18089 450 aa23.41■■□□□ 1.34
UBE4B-204ENST00000462658 PIAS4Q8N2W9 510 aaPredicted RBP22.8■■□□□ 1.24
UBE4B-204ENST00000462658 MSH5O43196 834 aa22.1■■□□□ 1.13
UBE4B-204ENST00000462658 PPP4R3CPQ6ZMV5 832 aa21.68■■□□□ 1.06
UBE4B-204ENST00000462658 KCNA4P22459 653 aa21.42■■□□□ 1.02
UBE4B-204ENST00000462658 SCAF1Q9H7N4 1312 aaKnown RBP21.28■■□□□ 1
UBE4B-204ENST00000462658 MAPK8IP2Q13387 824 aaPredicted RBP21.21■□□□□ 0.99
UBE4B-204ENST00000462658 NCBP3Q53F19 620 aaKnown RBP21.09■□□□□ 0.97
UBE4B-204ENST00000462658 CNKSR2Q8WXI2 1034 aa20.99■□□□□ 0.95
UBE4B-204ENST00000462658 NPM3O75607 178 aaKnown RBP20.87■□□□□ 0.93
UBE4B-204ENST00000462658 DMRT2Q9Y5R5 561 aa20.77■□□□□ 0.92
UBE4B-204ENST00000462658 RNF216Q9NWF9 866 aaPredicted RBP20.52■□□□□ 0.88
UBE4B-204ENST00000462658 HOXD11P31277 338 aaPredicted RBP20.4■□□□□ 0.86
UBE4B-204ENST00000462658 SLC4A1APQ9BWU0 796 aaKnown RBP20.4■□□□□ 0.86
UBE4B-204ENST00000462658 EHMT2Q96KQ7 1210 aa20.1■□□□□ 0.81
UBE4B-204ENST00000462658 DNAJC5BQ9UF47 199 aa20.09■□□□□ 0.81
UBE4B-204ENST00000462658 DCAF8L1A6NGE4 600 aa19.94■□□□□ 0.78
UBE4B-204ENST00000462658 POTEDQ86YR6 584 aa19.9■□□□□ 0.78
UBE4B-204ENST00000462658 CSRNP3Q8WYN3 585 aa19.75■□□□□ 0.75
UBE4B-204ENST00000462658 ZBTB22O15209 634 aa19.74■□□□□ 0.75
UBE4B-204ENST00000462658 SLC4A2P04920 1241 aa19.67■□□□□ 0.74
UBE4B-204ENST00000462658 FOXD4L1Q9NU39 408 aa19.61■□□□□ 0.73
UBE4B-204ENST00000462658 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.48■□□□□ 0.71
UBE4B-204ENST00000462658 MYCNP04198 464 aaPredicted RBP19.22■□□□□ 0.67
UBE4B-204ENST00000462658 U3KPZ7 1027 aaPredicted RBP19.2■□□□□ 0.66
UBE4B-204ENST00000462658 RNF39Q9H2S5 420 aa19■□□□□ 0.63
UBE4B-204ENST00000462658 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.9■□□□□ 0.62
UBE4B-204ENST00000462658 HNRNPUL2Q1KMD3 747 aaKnown RBP18.9■□□□□ 0.62
UBE4B-204ENST00000462658 SAMD1Q6SPF0 538 aaPredicted RBP18.88■□□□□ 0.61
UBE4B-204ENST00000462658 ATXN8OSP0DMR3 200 aa18.84■□□□□ 0.61
UBE4B-204ENST00000462658 ATF5Q9Y2D1 282 aaPredicted RBP18.81■□□□□ 0.6
UBE4B-204ENST00000462658 C1QBPQ07021 282 aaKnown RBP18.74■□□□□ 0.59
UBE4B-204ENST00000462658 SPINK5Q9NQ38 1064 aaPredicted RBP18.65■□□□□ 0.58
UBE4B-204ENST00000462658 APLP2Q06481 763 aa18.64■□□□□ 0.57
UBE4B-204ENST00000462658 CAPN15O75808 1086 aa18.54■□□□□ 0.56
UBE4B-204ENST00000462658 TRHP20396 242 aaPredicted RBP18.51■□□□□ 0.55
UBE4B-204ENST00000462658 ZNF219Q9P2Y4 722 aaPredicted RBP18.43■□□□□ 0.54
UBE4B-204ENST00000462658 CACNB1Q02641 598 aaPredicted RBP18.4■□□□□ 0.54
UBE4B-204ENST00000462658 ABCB7O75027 752 aa18.25■□□□□ 0.51
UBE4B-204ENST00000462658 POLA2Q14181 598 aa18.23■□□□□ 0.51
UBE4B-204ENST00000462658 DSG3P32926 999 aa18.17■□□□□ 0.5
UBE4B-204ENST00000462658 MKRN4PQ13434 485 aaPredicted RBP17.97■□□□□ 0.47
UBE4B-204ENST00000462658 FBLN2P98095 1184 aa17.89■□□□□ 0.45
UBE4B-204ENST00000462658 FKBP8Q14318 412 aa17.85■□□□□ 0.45
UBE4B-204ENST00000462658 ZBTB12Q9Y330 459 aaPredicted RBP17.83■□□□□ 0.44
UBE4B-204ENST00000462658 OSCARQ8IYS5 282 aa17.63■□□□□ 0.41
UBE4B-204ENST00000462658 SPDYE4A6NLX3 237 aa17.61■□□□□ 0.41
UBE4B-204ENST00000462658 ZNF692Q9BU19 519 aaPredicted RBP17.42■□□□□ 0.38
UBE4B-204ENST00000462658 SPDYE2BA6NHP3 402 aa17.41■□□□□ 0.38
UBE4B-204ENST00000462658 SPDYE6P0CI01 402 aa17.41■□□□□ 0.38
UBE4B-204ENST00000462658 SPDYE2Q495Y8 402 aa17.41■□□□□ 0.38
UBE4B-204ENST00000462658 SSUH2Q9Y2M2 353 aa17.32■□□□□ 0.36
UBE4B-204ENST00000462658 PROM2Q8N271 834 aa17.31■□□□□ 0.36
UBE4B-204ENST00000462658 RBM42Q9BTD8 480 aaKnown RBP17.23■□□□□ 0.35
UBE4B-204ENST00000462658 PABPN1Q86U42 306 aaKnown RBP eCLIP17.22■□□□□ 0.35
UBE4B-204ENST00000462658 AKT1S1Q96B36 256 aa17.08■□□□□ 0.32
UBE4B-204ENST00000462658 FBXO3Q9UK99 471 aa17.05■□□□□ 0.32
UBE4B-204ENST00000462658 REM2Q8IYK8 340 aaPredicted RBP16.97■□□□□ 0.31
UBE4B-204ENST00000462658 VASPP50552 380 aaPredicted RBP16.88■□□□□ 0.29
UBE4B-204ENST00000462658 STAG3Q9UJ98 1225 aa16.87■□□□□ 0.29
UBE4B-204ENST00000462658 SPDYE1Q8NFV5 336 aaPredicted RBP16.86■□□□□ 0.29
UBE4B-204ENST00000462658 CLEC11AQ9Y240 323 aa16.85■□□□□ 0.29
UBE4B-204ENST00000462658 PITPNM1O00562 1244 aa16.78■□□□□ 0.28
UBE4B-204ENST00000462658 IFNLR1Q8IU57 520 aaPredicted RBP16.7■□□□□ 0.26
UBE4B-204ENST00000462658 MIER1Q8N108 512 aa16.69■□□□□ 0.26
UBE4B-204ENST00000462658 PRR29P0C7W0 189 aa16.68■□□□□ 0.26
UBE4B-204ENST00000462658 PLCD3Q8N3E9 789 aa16.68■□□□□ 0.26
UBE4B-204ENST00000462658 KLHL34Q8N239 644 aa16.57■□□□□ 0.24
UBE4B-204ENST00000462658 RTN4Q9NQC3 1192 aaKnown RBP16.56■□□□□ 0.24
UBE4B-204ENST00000462658 CREBZFQ9NS37 354 aa16.54■□□□□ 0.24
UBE4B-204ENST00000462658 PLEKHG5O94827 1062 aa16.51■□□□□ 0.23
UBE4B-204ENST00000462658 AMER1Q5JTC6 1135 aaPredicted RBP16.5■□□□□ 0.23
UBE4B-204ENST00000462658 CHRDL2Q6WN34 429 aa16.5■□□□□ 0.23
UBE4B-204ENST00000462658 CHADLQ6NUI6 762 aa16.46■□□□□ 0.23
UBE4B-204ENST00000462658 NISCHQ9Y2I1 1504 aa16.44■□□□□ 0.22
UBE4B-204ENST00000462658 SPOCK2Q92563 424 aa16.43■□□□□ 0.22
UBE4B-204ENST00000462658 FXR2P51116 673 aaKnown RBP eCLIP16.41■□□□□ 0.223e-6■■■■□ 24.6
UBE4B-204ENST00000462658 ZBTB47Q9UFB7 747 aaPredicted RBP16.39■□□□□ 0.21
UBE4B-204ENST00000462658 MNX1P50219 401 aaPredicted RBP16.38■□□□□ 0.21
UBE4B-204ENST00000462658 PRKAR2AP13861 404 aaKnown RBP16.36■□□□□ 0.21
UBE4B-204ENST00000462658 PIP4P2Q8N4L2 257 aa16.35■□□□□ 0.21
UBE4B-204ENST00000462658 NUBP1P53384 320 aa16.25■□□□□ 0.19
UBE4B-204ENST00000462658 FARP1Q9Y4F1 1045 aaPredicted RBP16.25■□□□□ 0.19
UBE4B-204ENST00000462658 PKD2Q13563 968 aa16.21■□□□□ 0.19
UBE4B-204ENST00000462658 NPM1P06748 294 aaKnown RBP eCLIP16.2■□□□□ 0.18
UBE4B-204ENST00000462658 CIZ1Q9ULV3 898 aaPredicted RBP16.19■□□□□ 0.18
UBE4B-204ENST00000462658 RASEFQ8IZ41 740 aa16.16■□□□□ 0.18
UBE4B-204ENST00000462658 DCAF8Q5TAQ9 597 aa16.12■□□□□ 0.17
UBE4B-204ENST00000462658 FAM212AQ96EL1 285 aa16.07■□□□□ 0.16
UBE4B-204ENST00000462658 ECM2O94769 699 aaPredicted RBP16.06■□□□□ 0.16
UBE4B-204ENST00000462658 GSE1Q14687 1217 aa16.06■□□□□ 0.16
UBE4B-204ENST00000462658 TSPYL2Q9H2G4 693 aaPredicted RBP16.04■□□□□ 0.16
UBE4B-204ENST00000462658 RGL2O15211 777 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms