RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 TLDC2A0PJX2 215 aa7.26□□□□□ -1.25
VPS13A-207ENST00000419472 RNF40O75150 1001 aa7.26□□□□□ -1.25
VPS13A-207ENST00000419472 MAPK8P45983 427 aa7.26□□□□□ -1.25
VPS13A-207ENST00000419472 TSEN2Q8NCE0 465 aaKnown RBP7.26□□□□□ -1.25
VPS13A-207ENST00000419472 DUSP9Q99956 384 aaKnown RBP7.26□□□□□ -1.25
VPS13A-207ENST00000419472 ATP2B1P20020 1258 aa7.25□□□□□ -1.25
VPS13A-207ENST00000419472 TRIM50Q86XT4 487 aa7.25□□□□□ -1.25
VPS13A-207ENST00000419472 MORN1Q5T089 497 aa7.25□□□□□ -1.25
VPS13A-207ENST00000419472 PSME1Q06323 249 aa7.25□□□□□ -1.25
VPS13A-207ENST00000419472 MAP7D1Q3KQU3 841 aa7.25□□□□□ -1.25
VPS13A-207ENST00000419472 TREHO43280 583 aa7.24□□□□□ -1.25
VPS13A-207ENST00000419472 BRD2P25440 801 aaKnown RBP7.24□□□□□ -1.25
VPS13A-207ENST00000419472 CTHP32929 405 aa7.24□□□□□ -1.25
VPS13A-207ENST00000419472 XPCQ01831 940 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-207ENST00000419472 SF3B2Q13435 895 aaKnown RBP7.24□□□□□ -1.25
VPS13A-207ENST00000419472 EGFLAMQ63HQ2 1017 aa7.24□□□□□ -1.25
VPS13A-207ENST00000419472 ADAM32Q8TC27 787 aa7.24□□□□□ -1.25
VPS13A-207ENST00000419472 KCNK17Q96T54 332 aa7.24□□□□□ -1.25
VPS13A-207ENST00000419472 CCSER2Q9H7U1 834 aa7.24□□□□□ -1.25
VPS13A-207ENST00000419472 CUEDC1Q9NWM3 386 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-207ENST00000419472 LDHBP07195 334 aaKnown RBP7.24□□□□□ -1.25
VPS13A-207ENST00000419472 HOXB3P14651 431 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-207ENST00000419472 FMR1Q06787 632 aaKnown RBP eCLIP7.24□□□□□ -1.25
VPS13A-207ENST00000419472 FAM9AQ8IZU1 332 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-207ENST00000419472 MRS2Q9HD23 443 aa7.24□□□□□ -1.25
VPS13A-207ENST00000419472 DOLKQ9UPQ8 538 aa7.24□□□□□ -1.25
VPS13A-207ENST00000419472 SDE2Q6IQ49 451 aa7.23□□□□□ -1.25
VPS13A-207ENST00000419472 SAMD7Q7Z3H4 446 aa7.23□□□□□ -1.25
VPS13A-207ENST00000419472 VTI1AQ96AJ9 217 aa7.23□□□□□ -1.25
VPS13A-207ENST00000419472 SPACA7Q96KW9 195 aa7.23□□□□□ -1.25
VPS13A-207ENST00000419472 TGIF2Q9GZN2 237 aa7.23□□□□□ -1.25
VPS13A-207ENST00000419472 BCL11AQ9H165 835 aa7.23□□□□□ -1.25
VPS13A-207ENST00000419472 ZSWIM4Q9H7M6 989 aa7.23□□□□□ -1.25
VPS13A-207ENST00000419472 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.23□□□□□ -1.25
VPS13A-207ENST00000419472 TBX22Q9Y458 520 aa7.23□□□□□ -1.25
VPS13A-207ENST00000419472 MPSTP25325 297 aa7.23□□□□□ -1.25
VPS13A-207ENST00000419472 RNF34Q969K3 372 aa7.23□□□□□ -1.25
VPS13A-207ENST00000419472 WEE1P30291 646 aa7.22□□□□□ -1.25
VPS13A-207ENST00000419472 RBCK1Q9BYM8 510 aa7.22□□□□□ -1.25
VPS13A-207ENST00000419472 PCDHGA11Q9Y5H2 935 aa7.22□□□□□ -1.25
VPS13A-207ENST00000419472 TMC1Q8TDI8 760 aa7.22□□□□□ -1.25
VPS13A-207ENST00000419472 VTI1BQ9UEU0 232 aa7.22□□□□□ -1.25
VPS13A-207ENST00000419472 PCDHGB7Q9Y5F8 929 aa7.22□□□□□ -1.25
VPS13A-207ENST00000419472 BAZ1BQ9UIG0 1483 aaKnown RBP7.22□□□□□ -1.25
VPS13A-207ENST00000419472 SORBS3O60504 671 aa7.21□□□□□ -1.25
VPS13A-207ENST00000419472 HELQQ8TDG4 1101 aa7.21□□□□□ -1.25
VPS13A-207ENST00000419472 CCDC87Q9NVE4 849 aa7.21□□□□□ -1.25
VPS13A-207ENST00000419472 TCEAL1Q15170 157 aa7.21□□□□□ -1.26
VPS13A-207ENST00000419472 ZNF394Q53GI3 561 aa7.21□□□□□ -1.26
VPS13A-207ENST00000419472 PPP1R18Q6NYC8 613 aa7.21□□□□□ -1.26
VPS13A-207ENST00000419472 KLHL42Q9P2K6 505 aa7.21□□□□□ -1.26
VPS13A-207ENST00000419472 METRNQ9UJH8 293 aa7.21□□□□□ -1.26
VPS13A-207ENST00000419472 MROH2BQ7Z745 1585 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 USB1Q9BQ65 265 aaKnown RBP7.2□□□□□ -1.26
VPS13A-207ENST00000419472 RBM19Q9Y4C8 960 aaKnown RBP7.2□□□□□ -1.26
VPS13A-207ENST00000419472 ZNF76P36508 570 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 PTK2Q05397 1052 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 EHHADHQ08426 723 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 TMC4Q7Z404 712 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 JAZF1Q86VZ6 243 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 DMGDHQ9UI17 866 aaKnown RBP7.2□□□□□ -1.26
VPS13A-207ENST00000419472 EMILIN1Q9Y6C2 1016 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 GPR182O15218 404 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 IGHA2P01877 340 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 DSC3Q14574 896 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 SLC43A3Q8NBI5 491 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 ZBED2Q9BTP6 218 aa7.2□□□□□ -1.26
VPS13A-207ENST00000419472 DAB2P98082 770 aa7.19□□□□□ -1.26
VPS13A-207ENST00000419472 SAP130Q9H0E3 1048 aa7.19□□□□□ -1.26
VPS13A-207ENST00000419472 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.19□□□□□ -1.26
VPS13A-207ENST00000419472 PRPF40AO75400 957 aaKnown RBP7.19□□□□□ -1.26
VPS13A-207ENST00000419472 GIGYF1O75420 1035 aaPredicted RBP7.19□□□□□ -1.26
VPS13A-207ENST00000419472 PDXDC2PQ6P474 469 aa7.19□□□□□ -1.26
VPS13A-207ENST00000419472 RACK1P63244 317 aaKnown RBP7.18□□□□□ -1.26
VPS13A-207ENST00000419472 PSMD2Q13200 908 aa7.18□□□□□ -1.26
VPS13A-207ENST00000419472 BMS1Q14692 1282 aaKnown RBP7.18□□□□□ -1.26
VPS13A-207ENST00000419472 SLC39A7Q92504 469 aa7.18□□□□□ -1.26
VPS13A-207ENST00000419472 PDE3BQ13370 1112 aa7.18□□□□□ -1.26
VPS13A-207ENST00000419472 CARD14Q9BXL6 1004 aa7.18□□□□□ -1.26
VPS13A-207ENST00000419472 HAX1O00165 279 aa7.17□□□□□ -1.26
VPS13A-207ENST00000419472 PSEN2P49810 448 aa7.17□□□□□ -1.26
VPS13A-207ENST00000419472 PTPRNQ16849 979 aa7.17□□□□□ -1.26
VPS13A-207ENST00000419472 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS13A-207ENST00000419472 GMLQ99445 158 aa7.17□□□□□ -1.26
VPS13A-207ENST00000419472 MRPL42Q9Y6G3 142 aaKnown RBP7.17□□□□□ -1.26
VPS13A-207ENST00000419472 NDUFB5O43674 189 aa7.17□□□□□ -1.26
VPS13A-207ENST00000419472 Q3C1V9 767 aa7.17□□□□□ -1.26
VPS13A-207ENST00000419472 METTL5Q9NRN9 209 aaKnown RBP7.17□□□□□ -1.26
VPS13A-207ENST00000419472 NLRP2Q9NX02 1062 aa7.17□□□□□ -1.26
VPS13A-207ENST00000419472 GPSM3Q9Y4H4 160 aa7.17□□□□□ -1.26
VPS13A-207ENST00000419472 PPME1Q9Y570 386 aa7.17□□□□□ -1.26
VPS13A-207ENST00000419472 LAMC3Q9Y6N6 1575 aa7.17□□□□□ -1.26
VPS13A-207ENST00000419472 PTCD1O75127 700 aaKnown RBP7.16□□□□□ -1.26
VPS13A-207ENST00000419472 NPR3P17342 541 aa7.16□□□□□ -1.26
VPS13A-207ENST00000419472 HDGFP51858 240 aaKnown RBP7.16□□□□□ -1.26
VPS13A-207ENST00000419472 ZNF526Q8TF50 670 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-207ENST00000419472 ZNF592Q92610 1267 aa7.16□□□□□ -1.26
VPS13A-207ENST00000419472 ARHGAP9Q9BRR9 750 aa7.16□□□□□ -1.26
VPS13A-207ENST00000419472 PRKD2Q9BZL6 878 aa7.16□□□□□ -1.26
VPS13A-207ENST00000419472 FAM13AO94988 1023 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms