RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 CCDC178Q5BJE1 867 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 ANKS4BQ8N8V4 417 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 RAB34Q9BZG1 259 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 EHMT1Q9H9B1 1298 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 UBE4AQ14139 1066 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 NEMFO60524 1076 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 NUP62CLQ9H1M0 184 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 ELL2O00472 640 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-210ENST00000409694 CETN1Q12798 172 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 SFPQP23246 707 aaKnown RBP eCLIP9.17□□□□□ -0.94
SYNE1-210ENST00000409694 SETSIPP0DME0 302 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 CEP112Q8N8E3 955 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 PPP6R1Q9UPN7 881 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 TTC12Q9H892 705 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-210ENST00000409694 PDS5BQ9NTI5 1447 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 CTNNA2P26232 953 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 DNAJC2Q99543 621 aaKnown RBP9.17□□□□□ -0.94
SYNE1-210ENST00000409694 SLU7O95391 586 aaKnown RBP9.17□□□□□ -0.94
SYNE1-210ENST00000409694 NEK4P51957 841 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 CCDC6Q16204 474 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 FAM177A1Q8N128 213 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-210ENST00000409694 ANAPC4Q9UJX5 808 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 IFI16Q16666 785 aaKnown RBP9.17□□□□□ -0.94
SYNE1-210ENST00000409694 FERMT2Q96AC1 680 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 DRC1Q96MC2 740 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 LNPKQ9C0E8 428 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 GRPEL1Q9HAV7 217 aa9.17□□□□□ -0.94
SYNE1-210ENST00000409694 CIZ1Q9ULV3 898 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-210ENST00000409694 PLIN1O60240 522 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 WDHD1O75717 1129 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-210ENST00000409694 PAFAH1B1P43034 410 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 PYM1Q9BRP8 204 aaKnown RBP9.16□□□□□ -0.94
SYNE1-210ENST00000409694 MTMR7Q9Y216 660 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 PLVAPQ9BX97 442 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 GNAI2P04899 355 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 PTPN14Q15678 1187 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 CTR9Q6PD62 1173 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 HSPA4P34932 840 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 RBM10P98175 930 aaKnown RBP9.16□□□□□ -0.94
SYNE1-210ENST00000409694 RNF187Q5TA31 235 aaPredicted RBP9.16□□□□□ -0.94
SYNE1-210ENST00000409694 GAS2L2Q8NHY3 880 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 IVLP07476 585 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 DNAAF4Q8WXU2 420 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 TRAK1Q9UPV9 953 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 CNNM1Q9NRU3 951 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 UBAC1Q9BSL1 405 aa9.16□□□□□ -0.94
SYNE1-210ENST00000409694 KIF3CO14782 793 aa9.15□□□□□ -0.94
SYNE1-210ENST00000409694 MAP3K11Q16584 847 aa9.15□□□□□ -0.94
SYNE1-210ENST00000409694 FAM114A2Q9NRY5 505 aa9.15□□□□□ -0.94
SYNE1-210ENST00000409694 CCT4P50991 539 aaKnown RBP9.15□□□□□ -0.94
SYNE1-210ENST00000409694 ATP2B2Q01814 1243 aa9.15□□□□□ -0.94
SYNE1-210ENST00000409694 MKRN1Q9UHC7 482 aaKnown RBP9.15□□□□□ -0.94
SYNE1-210ENST00000409694 CACNA2D4Q7Z3S7 1137 aa9.15□□□□□ -0.94
SYNE1-210ENST00000409694 K7ELQ4 463 aaPredicted RBP9.15□□□□□ -0.94
SYNE1-210ENST00000409694 FYCO1Q9BQS8 1478 aa9.15□□□□□ -0.94
SYNE1-210ENST00000409694 CCDC172P0C7W6 258 aa9.15□□□□□ -0.94
SYNE1-210ENST00000409694 ATP2B1P20020 1258 aa9.15□□□□□ -0.94
SYNE1-210ENST00000409694 PPP1R14CQ8TAE6 165 aa9.15□□□□□ -0.94
SYNE1-210ENST00000409694 TTC21AQ8NDW8 1320 aa9.15□□□□□ -0.94
SYNE1-210ENST00000409694 CEBPZQ03701 1054 aaKnown RBP9.15□□□□□ -0.94
SYNE1-210ENST00000409694 CEP135Q66GS9 1140 aa9.15□□□□□ -0.95
SYNE1-210ENST00000409694 TTC14Q96N46 770 aa9.15□□□□□ -0.95
SYNE1-210ENST00000409694 CTAGE5O15320 804 aa9.15□□□□□ -0.95
SYNE1-210ENST00000409694 MRPS9P82933 396 aaKnown RBP9.15□□□□□ -0.95
SYNE1-210ENST00000409694 CFAP100Q494V2 611 aa9.15□□□□□ -0.95
SYNE1-210ENST00000409694 KLHL34Q8N239 644 aa9.15□□□□□ -0.95
SYNE1-210ENST00000409694 NECTIN2Q92692 538 aa9.15□□□□□ -0.95
SYNE1-210ENST00000409694 GSDMDP57764 484 aa9.14□□□□□ -0.95
SYNE1-210ENST00000409694 LARP1BQ659C4 914 aaKnown RBP9.14□□□□□ -0.95
SYNE1-210ENST00000409694 L3MBTL2Q969R5 705 aa9.14□□□□□ -0.95
SYNE1-210ENST00000409694 BRD4O60885 1362 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-210ENST00000409694 YEATS4O95619 227 aa9.14□□□□□ -0.95
SYNE1-210ENST00000409694 TMEM266Q2M3C6 531 aa9.14□□□□□ -0.95
SYNE1-210ENST00000409694 RASAL2Q9UJF2 1139 aa9.14□□□□□ -0.95
SYNE1-210ENST00000409694 DHX57Q6P158 1386 aaKnown RBP9.14□□□□□ -0.95
SYNE1-210ENST00000409694 STXBP4Q6ZWJ1 553 aa9.14□□□□□ -0.95
SYNE1-210ENST00000409694 CTNNBL1Q8WYA6 563 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-210ENST00000409694 ACTN2P35609 894 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 SWAP70Q9UH65 585 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 GPRASP1Q5JY77 1395 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 ATF3P18847 181 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 CCDC155Q8N6L0 562 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 CKAP4Q07065 602 aaKnown RBP9.13□□□□□ -0.95
SYNE1-210ENST00000409694 MSL1Q68DK7 614 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 SMARCC1Q92922 1105 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-210ENST00000409694 POLA1P09884 1462 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-210ENST00000409694 TUBB4BP68371 445 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 TMEM87AQ8NBN3 555 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 CCDC196A0A1B0GTZ2 297 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 SPDYE4A6NLX3 237 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 GOLIM4O00461 696 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 DHX37Q8IY37 1157 aaKnown RBP9.13□□□□□ -0.95
SYNE1-210ENST00000409694 IQCGQ9H095 443 aaKnown RBP9.13□□□□□ -0.95
SYNE1-210ENST00000409694 ANO10Q9NW15 660 aa9.13□□□□□ -0.95
SYNE1-210ENST00000409694 HSF2BPO75031 334 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 PRKRIP1Q9H875 184 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-210ENST00000409694 PRPHP41219 470 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 SSBP05455 408 aaKnown RBP eCLIP9.12□□□□□ -0.95
SYNE1-210ENST00000409694 CNGA1P29973 690 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 KIF5AQ12840 1032 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms