RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 PELP1Q8IZL8 1130 aaKnown RBP13.13□□□□□ -0.31
SYNE1-210ENST00000409694 DCAF8L2P0C7V8 631 aa12.67□□□□□ -0.38
SYNE1-210ENST00000409694 CCER1Q8TC90 406 aaPredicted RBP12.48□□□□□ -0.41
SYNE1-210ENST00000409694 ERICH6Q7L0X2 663 aa12.42□□□□□ -0.42
SYNE1-210ENST00000409694 MYT1Q01538 1121 aa12.4□□□□□ -0.42
SYNE1-210ENST00000409694 FAM9AQ8IZU1 332 aaPredicted RBP12.25□□□□□ -0.45
SYNE1-210ENST00000409694 APLP2Q06481 763 aa12.22□□□□□ -0.45
SYNE1-210ENST00000409694 CENPBP07199 599 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-210ENST00000409694 YTHDC1Q96MU7 727 aaKnown RBP12.08□□□□□ -0.48
SYNE1-210ENST00000409694 SUPT5HO00267 1087 aaKnown RBP12.05□□□□□ -0.48
SYNE1-210ENST00000409694 NEFLP07196 543 aa11.96□□□□□ -0.49
SYNE1-210ENST00000409694 ZEB1P37275 1124 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-210ENST00000409694 DAXXQ9UER7 740 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-210ENST00000409694 EHMT2Q96KQ7 1210 aa11.76□□□□□ -0.53
SYNE1-210ENST00000409694 TTBK1Q5TCY1 1321 aaPredicted RBP11.7□□□□□ -0.54
SYNE1-210ENST00000409694 SHROOM4Q9ULL8 1493 aa11.65□□□□□ -0.54
SYNE1-210ENST00000409694 PCGF6Q9BYE7 350 aa11.62□□□□□ -0.55
SYNE1-210ENST00000409694 NISCHQ9Y2I1 1504 aa11.53□□□□□ -0.56
SYNE1-210ENST00000409694 ZNF316A6NFI3 1004 aaPredicted RBP11.52□□□□□ -0.57
SYNE1-210ENST00000409694 RTL5Q5HYW3 569 aaPredicted RBP11.52□□□□□ -0.57
SYNE1-210ENST00000409694 ATP1B4Q9UN42 357 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-210ENST00000409694 RANGAP1P46060 587 aaPredicted RBP11.31□□□□□ -0.6
SYNE1-210ENST00000409694 TRIM41Q8WV44 630 aa11.31□□□□□ -0.6
SYNE1-210ENST00000409694 CLSPNQ9HAW4 1339 aa11.31□□□□□ -0.6
SYNE1-210ENST00000409694 UBTFP17480 764 aaKnown RBP11.31□□□□□ -0.6
SYNE1-210ENST00000409694 ZBTB47Q9UFB7 747 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-210ENST00000409694 MYT1LQ9UL68 1186 aa11.18□□□□□ -0.62
SYNE1-210ENST00000409694 POLR3GLQ9BT43 218 aa11.17□□□□□ -0.62
SYNE1-210ENST00000409694 GLIPR1L2Q4G1C9 344 aa11.15□□□□□ -0.62
SYNE1-210ENST00000409694 TRIM26Q12899 539 aaPredicted RBP11.13□□□□□ -0.63
SYNE1-210ENST00000409694 SLC4A1APQ9BWU0 796 aaKnown RBP11.11□□□□□ -0.63
SYNE1-210ENST00000409694 ANP32BQ92688 251 aaKnown RBP11.09□□□□□ -0.63
SYNE1-210ENST00000409694 NEFMP07197 916 aa11.03□□□□□ -0.64
SYNE1-210ENST00000409694 CDK11AQ9UQ88 783 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-210ENST00000409694 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-210ENST00000409694 HNRNPUL2Q1KMD3 747 aaKnown RBP11.01□□□□□ -0.65
SYNE1-210ENST00000409694 HRCP23327 699 aa11.01□□□□□ -0.65
SYNE1-210ENST00000409694 ANP32AP39687 249 aaKnown RBP10.96□□□□□ -0.65
SYNE1-210ENST00000409694 CANXP27824 592 aaKnown RBP10.95□□□□□ -0.66
SYNE1-210ENST00000409694 ITGAEP38570 1179 aa10.92□□□□□ -0.66
SYNE1-210ENST00000409694 DIEXFQ68CQ4 756 aaKnown RBP10.9□□□□□ -0.67
SYNE1-210ENST00000409694 CHIC1Q5VXU3 224 aa10.88□□□□□ -0.67
SYNE1-210ENST00000409694 CNGB1Q14028 1251 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-210ENST00000409694 ANP32CO43423 234 aa10.86□□□□□ -0.67
SYNE1-210ENST00000409694 CDK11BP21127 795 aaKnown RBP10.84□□□□□ -0.67
SYNE1-210ENST00000409694 HSP90AA1P07900 732 aaKnown RBP10.84□□□□□ -0.67
SYNE1-210ENST00000409694 UPF2Q9HAU5 1272 aaKnown RBP10.84□□□□□ -0.67
SYNE1-210ENST00000409694 EIF5BO60841 1220 aaKnown RBP10.82□□□□□ -0.68
SYNE1-210ENST00000409694 SLC24A1O60721 1099 aa10.8□□□□□ -0.68
SYNE1-210ENST00000409694 PPARGC1BQ86YN6 1023 aaKnown RBP10.79□□□□□ -0.68
SYNE1-210ENST00000409694 TNNT2P45379 298 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-210ENST00000409694 TRIM52Q96A61 297 aa10.73□□□□□ -0.69
SYNE1-210ENST00000409694 FAM50AQ14320 339 aaKnown RBP10.71□□□□□ -0.7
SYNE1-210ENST00000409694 BCANQ96GW7 911 aa10.7□□□□□ -0.7
SYNE1-210ENST00000409694 GTF3C3Q9Y5Q9 886 aa10.67□□□□□ -0.7
SYNE1-210ENST00000409694 ANP32EQ9BTT0 268 aa10.65□□□□□ -0.7
SYNE1-210ENST00000409694 BCL11AQ9H165 835 aa10.65□□□□□ -0.7
SYNE1-210ENST00000409694 NPM2Q86SE8 214 aaKnown RBP10.63□□□□□ -0.71
SYNE1-210ENST00000409694 NEUROD1Q13562 356 aa10.61□□□□□ -0.71
SYNE1-210ENST00000409694 ZNF326Q5BKZ1 582 aaKnown RBP10.61□□□□□ -0.71
SYNE1-210ENST00000409694 TRIM44Q96DX7 344 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-210ENST00000409694 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-210ENST00000409694 NCLP19338 710 aaKnown RBP10.57□□□□□ -0.72
SYNE1-210ENST00000409694 MYH16Q9H6N6 1097 aa10.56□□□□□ -0.72
SYNE1-210ENST00000409694 GOLGA6L22H0YM25 854 aa10.54□□□□□ -0.72
SYNE1-210ENST00000409694 BECN1Q14457 450 aa10.53□□□□□ -0.72
SYNE1-210ENST00000409694 ZRSR1Q15695 479 aaKnown RBP10.53□□□□□ -0.72
SYNE1-210ENST00000409694 DDRGK1Q96HY6 314 aa10.52□□□□□ -0.73
SYNE1-210ENST00000409694 GOLGA6L6A8MZA4 724 aa10.5□□□□□ -0.73
SYNE1-210ENST00000409694 ESF1Q9H501 851 aaKnown RBP10.48□□□□□ -0.73
SYNE1-210ENST00000409694 ACIN1Q9UKV3 1341 aaKnown RBP10.47□□□□□ -0.73
SYNE1-210ENST00000409694 CASC1Q6TDU7 716 aa10.45□□□□□ -0.74
SYNE1-210ENST00000409694 NBR1Q14596 966 aa10.43□□□□□ -0.74
SYNE1-210ENST00000409694 PTMAP06454 111 aaKnown RBP10.43□□□□□ -0.74
SYNE1-210ENST00000409694 CCDC136Q96JN2 1154 aa10.43□□□□□ -0.74
SYNE1-210ENST00000409694 NRDCO43847 1150 aa10.42□□□□□ -0.74
SYNE1-210ENST00000409694 L1TD1Q5T7N2 865 aaKnown RBP10.41□□□□□ -0.74
SYNE1-210ENST00000409694 TONSLQ96HA7 1378 aa10.41□□□□□ -0.74
SYNE1-210ENST00000409694 DNTTIP2Q5QJE6 756 aaKnown RBP10.41□□□□□ -0.74
SYNE1-210ENST00000409694 FKBP8Q14318 412 aa10.4□□□□□ -0.74
SYNE1-210ENST00000409694 ERICH6BQ5W0A0 696 aa10.4□□□□□ -0.74
SYNE1-210ENST00000409694 ARXQ96QS3 562 aa10.4□□□□□ -0.74
SYNE1-210ENST00000409694 LOC105371045A0A1W2PR82 267 aa10.4□□□□□ -0.75
SYNE1-210ENST00000409694 WDR43Q15061 677 aaKnown RBP eCLIP10.39□□□□□ -0.75
SYNE1-210ENST00000409694 STAG3Q9UJ98 1225 aa10.39□□□□□ -0.75
SYNE1-210ENST00000409694 CHAF1AQ13111 956 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-210ENST00000409694 HNRNPUQ00839 825 aaKnown RBP eCLIP10.35□□□□□ -0.75
SYNE1-210ENST00000409694 TMC1Q8TDI8 760 aa10.32□□□□□ -0.76
SYNE1-210ENST00000409694 NAP1L5Q96NT1 182 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-210ENST00000409694 PPM1GO15355 546 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-210ENST00000409694 CHMP4BQ9H444 224 aaKnown RBP10.27□□□□□ -0.76
SYNE1-210ENST00000409694 FAM9BQ8IZU0 186 aa10.27□□□□□ -0.77
SYNE1-210ENST00000409694 USP35Q9P2H5 1018 aa10.27□□□□□ -0.77
SYNE1-210ENST00000409694 KIAA2012Q0VF49 1180 aa10.26□□□□□ -0.77
SYNE1-210ENST00000409694 FBLN2P98095 1184 aa10.26□□□□□ -0.77
SYNE1-210ENST00000409694 ZNF777Q9ULD5 760 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-210ENST00000409694 PTMSP20962 102 aa10.22□□□□□ -0.77
SYNE1-210ENST00000409694 MSNP26038 577 aaKnown RBP10.22□□□□□ -0.77
SYNE1-210ENST00000409694 CFAP44Q96MT7 982 aa10.22□□□□□ -0.77
SYNE1-210ENST00000409694 CHGAP10645 457 aaKnown RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms