RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 HSP90AB2PQ58FF8 381 aa10.27□□□□□ -0.77
RTN3-202ENST00000339997 RAB11FIP4Q86YS3 637 aa10.27□□□□□ -0.77
RTN3-202ENST00000339997 SRRTQ9BXP5 876 aaKnown RBP10.27□□□□□ -0.77
RTN3-202ENST00000339997 PDCL3Q9H2J4 239 aa10.27□□□□□ -0.77
RTN3-202ENST00000339997 TTC12Q9H892 705 aaPredicted RBP10.27□□□□□ -0.77
RTN3-202ENST00000339997 TCEAL9Q9UHQ7 104 aa10.27□□□□□ -0.77
RTN3-202ENST00000339997 TMPOP42166 694 aaKnown RBP10.26□□□□□ -0.77
RTN3-202ENST00000339997 UBE2Q2Q8WVN8 375 aa10.26□□□□□ -0.77
RTN3-202ENST00000339997 TNNT1P13805 278 aa10.26□□□□□ -0.77
RTN3-202ENST00000339997 MAP3K11Q16584 847 aa10.26□□□□□ -0.77
RTN3-202ENST00000339997 NINLQ9Y2I6 1382 aa10.26□□□□□ -0.77
RTN3-202ENST00000339997 GIMAP6Q6P9H5 292 aa10.26□□□□□ -0.77
RTN3-202ENST00000339997 PPFIBP1Q86W92 1011 aa10.26□□□□□ -0.77
RTN3-202ENST00000339997 BOLA2Q9H3K6 86 aa10.26□□□□□ -0.77
RTN3-202ENST00000339997 RNF216Q9NWF9 866 aaPredicted RBP10.26□□□□□ -0.77
RTN3-202ENST00000339997 ARHGEF11O15085 1522 aa10.26□□□□□ -0.77
RTN3-202ENST00000339997 BAG4O95429 457 aaKnown RBP10.25□□□□□ -0.77
RTN3-202ENST00000339997 ADCY5O95622 1261 aa10.25□□□□□ -0.77
RTN3-202ENST00000339997 SRCIN1Q9C0H9 1055 aa10.25□□□□□ -0.77
RTN3-202ENST00000339997 CIZ1Q9ULV3 898 aaPredicted RBP10.25□□□□□ -0.77
RTN3-202ENST00000339997 TRIM27P14373 513 aa10.25□□□□□ -0.77
RTN3-202ENST00000339997 ENOX2Q16206 610 aaKnown RBP10.25□□□□□ -0.77
RTN3-202ENST00000339997 FILIP1LQ4L180 1135 aa10.25□□□□□ -0.77
RTN3-202ENST00000339997 DUSP27Q5VZP5 1158 aa10.25□□□□□ -0.77
RTN3-202ENST00000339997 PCDHB15Q9Y5E8 787 aa10.25□□□□□ -0.77
RTN3-202ENST00000339997 RAD54L2Q9Y4B4 1467 aa10.25□□□□□ -0.77
RTN3-202ENST00000339997 DHX8Q14562 1220 aaKnown RBP10.25□□□□□ -0.77
RTN3-202ENST00000339997 CEP57L1Q8IYX8 460 aa10.25□□□□□ -0.77
RTN3-202ENST00000339997 DNAJC5BQ9UF47 199 aa10.25□□□□□ -0.77
RTN3-202ENST00000339997 CADPSQ9ULU8 1353 aa10.25□□□□□ -0.77
RTN3-202ENST00000339997 PTPRGP23470 1445 aa10.24□□□□□ -0.77
RTN3-202ENST00000339997 ZNF396Q96N95 335 aaPredicted RBP10.24□□□□□ -0.77
RTN3-202ENST00000339997 KDM6BO15054 1643 aa10.24□□□□□ -0.77
RTN3-202ENST00000339997 ATP2B2Q01814 1243 aa10.24□□□□□ -0.77
RTN3-202ENST00000339997 IKQ13123 557 aaPredicted RBP10.24□□□□□ -0.77
RTN3-202ENST00000339997 TBC1D9Q6ZT07 1266 aa10.24□□□□□ -0.77
RTN3-202ENST00000339997 TANGO6Q9C0B7 1094 aa10.24□□□□□ -0.77
RTN3-202ENST00000339997 CTTNBP2Q8WZ74 1663 aa10.24□□□□□ -0.77
RTN3-202ENST00000339997 SSBP05455 408 aaKnown RBP eCLIP10.24□□□□□ -0.77
RTN3-202ENST00000339997 CCDC191Q8NCU4 936 aa10.24□□□□□ -0.77
RTN3-202ENST00000339997 DEF6Q9H4E7 631 aa10.24□□□□□ -0.77
RTN3-202ENST00000339997 CC2D2AQ9P2K1 1620 aa10.24□□□□□ -0.77
RTN3-202ENST00000339997 ODF2Q5BJF6 829 aa10.24□□□□□ -0.77
RTN3-202ENST00000339997 WDR63Q8IWG1 891 aa10.24□□□□□ -0.77
RTN3-202ENST00000339997 NOL10Q9BSC4 688 aaKnown RBP10.24□□□□□ -0.77
RTN3-202ENST00000339997 CCT2P78371 535 aaKnown RBP10.23□□□□□ -0.77
RTN3-202ENST00000339997 CCDC43Q96MW1 224 aaKnown RBP10.23□□□□□ -0.77
RTN3-202ENST00000339997 CCDC8Q9H0W5 538 aaPredicted RBP10.23□□□□□ -0.77
RTN3-202ENST00000339997 CLIP2Q9UDT6 1046 aa10.23□□□□□ -0.77
RTN3-202ENST00000339997 NCOA2Q15596 1464 aa10.23□□□□□ -0.77
RTN3-202ENST00000339997 TMCO3Q6UWJ1 677 aa10.23□□□□□ -0.77
RTN3-202ENST00000339997 SFPQP23246 707 aaKnown RBP eCLIP10.23□□□□□ -0.77
RTN3-202ENST00000339997 ERCC4Q92889 916 aaPredicted RBP10.23□□□□□ -0.77
RTN3-202ENST00000339997 ARHGAP29Q52LW3 1261 aa10.23□□□□□ -0.77
RTN3-202ENST00000339997 AMOTL1Q8IY63 956 aa10.23□□□□□ -0.77
RTN3-202ENST00000339997 CDK19Q9BWU1 502 aa10.23□□□□□ -0.77
RTN3-202ENST00000339997 CCDC181Q5TID7 509 aa10.22□□□□□ -0.77
RTN3-202ENST00000339997 SMARCE1Q969G3 411 aa10.22□□□□□ -0.77
RTN3-202ENST00000339997 RRAGDQ9NQL2 400 aaPredicted RBP10.22□□□□□ -0.77
RTN3-202ENST00000339997 NEFHP12036 1026 aa10.22□□□□□ -0.77
RTN3-202ENST00000339997 CDR1P51861 262 aa10.22□□□□□ -0.77
RTN3-202ENST00000339997 GPATCH11Q8N954 259 aa10.22□□□□□ -0.77
RTN3-202ENST00000339997 PAF1Q8N7H5 531 aa10.22□□□□□ -0.77
RTN3-202ENST00000339997 JARID2Q92833 1246 aaPredicted RBP10.22□□□□□ -0.77
RTN3-202ENST00000339997 FAM83GA6ND36 823 aa10.21□□□□□ -0.77
RTN3-202ENST00000339997 RAB11FIP3O75154 756 aa10.21□□□□□ -0.77
RTN3-202ENST00000339997 MX1P20591 662 aa10.21□□□□□ -0.77
RTN3-202ENST00000339997 CNNM1Q9NRU3 951 aa10.21□□□□□ -0.77
RTN3-202ENST00000339997 KIAA0754O94854 1291 aa10.21□□□□□ -0.77
RTN3-202ENST00000339997 ZSCAN23Q3MJ62 389 aa10.21□□□□□ -0.77
RTN3-202ENST00000339997 C16orf71Q8IYS4 520 aaPredicted RBP10.21□□□□□ -0.77
RTN3-202ENST00000339997 NECAB1Q8N987 351 aa10.21□□□□□ -0.77
RTN3-202ENST00000339997 TBC1D32Q96NH3 1257 aa10.21□□□□□ -0.77
RTN3-202ENST00000339997 MAGEC2Q9UBF1 373 aaPredicted RBP10.21□□□□□ -0.77
RTN3-202ENST00000339997 ANKRD62A6NC57 917 aa10.21□□□□□ -0.78
RTN3-202ENST00000339997 XBP1P17861 261 aa10.21□□□□□ -0.78
RTN3-202ENST00000339997 PRIM1P49642 420 aaKnown RBP10.21□□□□□ -0.78
RTN3-202ENST00000339997 BRMS1Q9HCU9 246 aa10.21□□□□□ -0.78
RTN3-202ENST00000339997 MIA2Q96PC5 1412 aa10.21□□□□□ -0.78
RTN3-202ENST00000339997 ANXA1P04083 346 aa10.21□□□□□ -0.78
RTN3-202ENST00000339997 PLCD3Q8N3E9 789 aa10.21□□□□□ -0.78
RTN3-202ENST00000339997 KIF18AQ8NI77 898 aa10.21□□□□□ -0.78
RTN3-202ENST00000339997 SLC26A8Q96RN1 970 aa10.21□□□□□ -0.78
RTN3-202ENST00000339997 SNAPC4Q5SXM2 1469 aa10.21□□□□□ -0.78
RTN3-202ENST00000339997 IDH1O75874 414 aaKnown RBP10.2□□□□□ -0.78
RTN3-202ENST00000339997 SART3Q15020 963 aaKnown RBP10.2□□□□□ -0.78
RTN3-202ENST00000339997 ZNHIT6Q9NWK9 470 aaKnown RBP10.2□□□□□ -0.78
RTN3-202ENST00000339997 TBC1D2BQ9UPU7 963 aa10.2□□□□□ -0.78
RTN3-202ENST00000339997 KRT18P05783 430 aaKnown RBP10.2□□□□□ -0.78
RTN3-202ENST00000339997 USHBP1Q8N6Y0 703 aa10.2□□□□□ -0.78
RTN3-202ENST00000339997 RAI14Q9P0K7 980 aa10.2□□□□□ -0.78
RTN3-202ENST00000339997 CCT4P50991 539 aaKnown RBP10.2□□□□□ -0.78
RTN3-202ENST00000339997 KIF4BQ2VIQ3 1234 aa10.2□□□□□ -0.78
RTN3-202ENST00000339997 TTC39AQ5SRH9 613 aa10.2□□□□□ -0.78
RTN3-202ENST00000339997 RBM33Q96EV2 1170 aaKnown RBP10.2□□□□□ -0.78
RTN3-202ENST00000339997 LRRC2Q9BYS8 371 aa10.2□□□□□ -0.78
RTN3-202ENST00000339997 STRN4Q9NRL3 753 aa10.2□□□□□ -0.78
RTN3-202ENST00000339997 ZNF530Q6P9A1 599 aaPredicted RBP10.19□□□□□ -0.78
RTN3-202ENST00000339997 FAM107BQ9H098 131 aa10.19□□□□□ -0.78
RTN3-202ENST00000339997 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.19□□□□□ -0.781e-6■■■■■ 88.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms