RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 KATNAL2Q8IYT4 538 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CENPSQ8N2Z9 138 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TTLL6Q8N841 843 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FAM169BQ8N8A8 192 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF507Q8TCN5 953 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SPPL3Q8TCT6 385 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SPACA9Q96E40 222 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 C10orf90Q96M02 699 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 MFRPQ9BY79 579 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CELF4Q9BZC1 486 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ULBP1Q9BZM6 244 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 RSAD1Q9HA92 442 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TRPV4Q9HBA0 871 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 DYRK4Q9NR20 520 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 NUDT15Q9NV35 164 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ARMC1Q9NVT9 282 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TJP2Q9UDY2 1190 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 GOLT1BQ9Y3E0 138 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRAMEF27A3QJZ7 478 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRAMEF25A6NGN4 478 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRAMEF26H0Y7S4 382 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRAMEF4O60810 478 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRAMEF11O60813 436 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ATG13O75143 517 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CKMT2P17540 419 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ITIH1P19827 911 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CXCR5P32302 372 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FSTL1Q12841 308 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 IMPG1Q17R60 797 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRAMEF5Q5TYX0 476 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF468Q5VIY5 522 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRAMEF9Q5VWM5 478 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRAMEF6Q5VXH4 476 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PHACTR4Q8IZ21 702 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 DAGLBQ8NCG7 672 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ULK4Q96C45 1275 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FBXO28Q9NVF7 368 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 NAALADL1Q9UQQ1 740 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 KIF24Q5T7B8 1368 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ERBINQ96RT1 1412 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 NFKBIEO00221 500 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ALDH1A1P00352 501 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 LDLRP01130 860 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 KITP10721 976 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 RYKP34925 604 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 STK19P49842 368 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TMED2Q15363 201 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 NEK7Q8TDX7 302 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 MAP4K1Q92918 833 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CCDC134Q9H6E4 229 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PITPNC1Q9UKF7 332 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TNNQ9UQP3 1299 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PCDHA11Q9Y5I1 949 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CYP46A1Q9Y6A2 500 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PHLPP2Q6ZVD8 1323 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 A0A087WV62 115 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PMS2P1A4D2B8 440 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 GNAI3P08754 354 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PCMT1P22061 227 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 HNRNPA2B1P22626 353 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FMO3P31513 532 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 VIPR1P32241 457 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 RPL4P36578 427 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 MTMR2Q13614 643 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 RAB30Q15771 203 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PGS1Q32NB8 556 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ASB18Q6ZVZ8 466 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 VTCN1Q7Z7D3 282 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SATL1Q86VE3 508 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 LRRN4CLQ8ND94 238 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FAM122AQ96E09 287 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PARD6GQ9BYG4 376 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SMOC1Q9H4F8 434 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 NARFLQ9H6Q4 476 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FAM212BQ9NTI7 297 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 WASF3Q9UPY6 502 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 HPSEQ9Y251 543 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 KCNIP3Q9Y2W7 256 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TOR1AO14656 332 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CCNB2O95067 398 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CDH1P12830 882 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 DDCP20711 480 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TNFRSF17Q02223 184 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRKCQQ04759 706 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SCARB2Q14108 478 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 LRRC14Q15048 493 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF789Q5FWF6 425 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 VWA5B1Q5TIE3 1220 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 KLBQ86Z14 1044 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 CPEB3Q8NE35 698 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 OR2W6PQ8NHA6 318 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 RAD51AP1Q96B01 352 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 LRCH3Q96II8 777 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SGCZQ96LD1 299 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 RILPQ96NA2 401 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ACO2Q99798 780 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SEMA3CQ99985 751 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 AIF1LQ9BQI0 150 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 TCEAL7Q9BRU2 100 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 GTPBP2Q9BX10 602 aaKnown RBP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms