RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CCDC122Q5T0U0 273 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 TMEM164Q5U3C3 297 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 SLC9A4Q6AI14 798 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 TIGD7Q6NT04 549 aaPredicted RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 NPNTQ6UXI9 565 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 CHST15Q7LFX5 561 aaPredicted RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 LYSMD3Q7Z3D4 306 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 TMC3Q7Z5M5 1100 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 ADGRG6Q86SQ4 1221 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 FAM129CQ86XR2 697 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 ZNF547Q8IVP9 402 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 CCDC13Q8IYE1 715 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 UNC5BQ8IZJ1 945 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 CACNA2D3Q8IZS8 1091 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 GPR26Q8NDV2 337 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 CPLX3Q8WVH0 158 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 SLC45A3Q96JT2 553 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 OLFM3Q96PB7 478 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 RNF157Q96PX1 679 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 PLEKHG4BQ96PX9 1271 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 MYCBPQ99417 103 aaPredicted RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 SLC38A3Q99624 504 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 CTRCQ99895 268 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 ARHGAP9Q9BRR9 750 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 CEP41Q9BYV8 373 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 FAM117AQ9C073 453 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 SLC25A18Q9H1K4 315 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 CARD9Q9H257 536 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 DEF6Q9H4E7 631 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 FAM83DQ9H4H8 585 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 PRDM8Q9NQV8 689 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 FBXO8Q9NRD0 319 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 ZNF624Q9P2J8 865 aaPredicted RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 NFKBIL1Q9UBC1 381 aaPredicted RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 CPNE7Q9UBL6 633 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 ZNHIT2Q9UHR6 403 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 RPL26L1Q9UNX3 145 aaKnown RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 PCDHB11Q9Y5F2 797 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 SLC30A1Q9Y6M5 507 aa6.64□□□□□ -1.35
VPS53-213ENST00000572334 MN1Q10571 1320 aaPredicted RBP6.64□□□□□ -1.35
VPS53-213ENST00000572334 UTP20O75691 2785 aaKnown RBP6.63□□□□□ -1.35
VPS53-213ENST00000572334 RGSL1A5PLK6 1076 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 LILRA5A6NI73 299 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 ARHGAP6O43182 974 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 GRID2O43424 1007 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 KIF1CO43896 1103 aaKnown RBP6.63□□□□□ -1.35
VPS53-213ENST00000572334 PPFIA2O75334 1257 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 STK17BO94768 372 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 C9P02748 559 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 ANKRD34CP0C6C1 535 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 PIRTP0C851 137 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 BPIP17213 487 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 XRCC1P18887 633 aaPredicted RBP6.63□□□□□ -1.35
VPS53-213ENST00000572334 CASP14P31944 242 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 MAN1A1P33908 653 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 SLC19A1P41440 591 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 NOP2P46087 812 aaKnown RBP6.63□□□□□ -1.35
VPS53-213ENST00000572334 ATP1A2P50993 1020 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 EPHB1P54762 984 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 EPHA4P54764 986 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 GFERP55789 205 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 UBASH3AP57075 661 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 RAB15P59190 212 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 DCDC1P59894 354 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 TUBB4BP68371 445 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 SRSF1Q07955 248 aaKnown RBP eCLIP6.63□□□□□ -1.35
VPS53-213ENST00000572334 PEX6Q13608 980 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 ESPL1Q14674 2120 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 MDC1Q14676 2089 aaKnown RBP6.63□□□□□ -1.35
VPS53-213ENST00000572334 HADHQ16836 314 aaKnown RBP6.63□□□□□ -1.35
VPS53-213ENST00000572334 DCAF12Q5T6F0 453 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 ATP1A1-AS1Q5TC04 95 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 BORAQ6PGQ7 559 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 ATG14Q6ZNE5 492 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 B4GALNT4Q76KP1 1039 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 C11orf96Q7Z7L8 435 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 PTRH1Q86Y79 214 aaKnown RBP6.63□□□□□ -1.35
VPS53-213ENST00000572334 NLGN4XQ8N0W4 816 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 NDUFAF2Q8N183 169 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 IL22RA1Q8N6P7 574 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 ZSCAN1Q8NBB4 408 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 KCTD6Q8NC69 237 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 NLGN4YQ8NFZ3 816 aaPredicted RBP6.63□□□□□ -1.35
VPS53-213ENST00000572334 OR10G6Q8NH81 332 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 NCSTNQ92542 709 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 PCSK5Q92824 1860 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 RNF31Q96EP0 1072 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 IMP4Q96G21 291 aaKnown RBP6.63□□□□□ -1.35
VPS53-213ENST00000572334 MS4A3Q96HJ5 214 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 HERPUD2Q9BSE4 406 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 MLPHQ9BV36 600 aaPredicted RBP6.63□□□□□ -1.35
VPS53-213ENST00000572334 ASPSCR1Q9BZE9 553 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 EPN3Q9H201 632 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 OR2AG1Q9H205 316 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 ADNPQ9H2P0 1102 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 RMI1Q9H9A7 625 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 UCK1Q9HA47 277 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 TRIM39Q9HCM9 518 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 PKD2L2Q9NZM6 624 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 AKAP7Q9P0M2 348 aaPredicted RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms