RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-217	ENST00000546164	SIRPG	Q9P1W8	387 aa		11.76	□□□□□ -0.53
YBX3-217	ENST00000546164	APPL1	Q9UKG1	709 aa		11.76	□□□□□ -0.53
YBX3-217	ENST00000546164	RP1	P56715	2156 aa		11.76	□□□□□ -0.53
YBX3-217	ENST00000546164	KMT2B	Q9UMN6	2715 aa	Predicted RBP	11.76	□□□□□ -0.53
YBX3-217	ENST00000546164	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	TRABD2B	A6NFA1	517 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	C2orf81	A6NN90	581 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	CHUK	O15111	745 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	NUDT21	O43809	227 aa	Known RBP	11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	VEGFD	O43915	354 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	SLC25A14	O95258	325 aa	Predicted RBP	11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	AP2A1	O95782	977 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	AK4	P27144	223 aa	Predicted RBP	11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	PDE1B	Q01064	536 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	OLIG2	Q13516	323 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	ATP13A5	Q4VNC0	1218 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	MARK2	Q7KZI7	788 aa	Known RBP	11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	ZNF438	Q7Z4V0	828 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	ADGRG6	Q86SQ4	1221 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	MARCH9	Q86YJ5	346 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	REXO1L1P	Q8IX06	675 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	MAIP1	Q8WWC4	291 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	C1orf54	Q8WWF1	131 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	ANP32B	Q92688	251 aa	Known RBP	11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	GRAMD1A	Q96CP6	724 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	DEPDC7	Q96QD5	511 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	APOL2	Q9BQE5	337 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	CCDC3	Q9BQI4	270 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	NRSN2	Q9GZP1	204 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	ABCG4	Q9H172	646 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	KCNF1	Q9H3M0	494 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	LRRC40	Q9H9A6	602 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	BPIFA1	Q9NP55	256 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	ATXN10	Q9UBB4	475 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	TMPRSS11E	Q9UL52	423 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	PKP3	Q9Y446	797 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	GPSM3	Q9Y4H4	160 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	PKD1L2	Q7Z442	2459 aa		11.75	□□□□□ -0.53
YBX3-217	ENST00000546164	BPTF	Q12830	3046 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	GLYATL1P3	A0A0U1RQE8	302 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	ERI2	A8K979	691 aa	Known RBP	11.74	□□□□□ -0.53
YBX3-217	ENST00000546164		B4DGG1	531 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	NTN3	O00634	580 aa	Predicted RBP	11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	GAPDHS	O14556	408 aa	Predicted RBP	11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	STX7	O15400	261 aa	Known RBP	11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	PSMD3	O43242	534 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	ZSCAN12	O43309	604 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	GRID2	O43424	1007 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	USP12	O75317	370 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	CRTAM	O95727	393 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	FGG	P02679	453 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	ZNF8	P17098	575 aa	Predicted RBP	11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	LPO	P22079	712 aa	Predicted RBP	11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	ACTR1B	P42025	376 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	CLCNKA	P51800	687 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	ACTR1A	P61163	376 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	NR1D2	Q14995	579 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	RTP5	Q14D33	572 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	SLC30A9	Q6PML9	568 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	SFTPA2	Q8IWL1	248 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	NAGS	Q8N159	534 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	ZDHHC1	Q8WTX9	485 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	CCDC74A	Q96AQ1	378 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	NXPE2	Q96DL1	559 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	OR2AG1	Q9H205	316 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	ZNHIT2	Q9UHR6	403 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	RABGEF1	Q9UJ41	708 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	ZNF148	Q9UQR1	794 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	DRG1	Q9Y295	367 aa	Known RBP	11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	JRKL	Q9Y4A0	524 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	PLEKHM1	Q9Y4G2	1056 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	ARL5A	Q9Y689	179 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164	SCN8A	Q9UQD0	1980 aa		11.74	□□□□□ -0.53
YBX3-217	ENST00000546164		A6NCN8	305 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	PRR19	A6NJB7	356 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	BUD23	O43709	281 aa	Known RBP	11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	CEP104	O60308	925 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	SUN1	O94901	812 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	ECEL1	O95672	775 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	FDFT1	P37268	417 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	ZNF140	P52738	457 aa	Predicted RBP	11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	SEMA5A	Q13591	1074 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	ITGA9	Q13797	1035 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	SPARCL1	Q14515	664 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	CHRNA6	Q15825	494 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	ST3GAL2	Q16842	350 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	ISX	Q2M1V0	245 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	KHDC1	Q4VXA5	237 aa	Known RBP	11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	LDLRAP1	Q5SW96	308 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	RBM44	Q6ZP01	1051 aa	Known RBP	11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	LINC00523	Q86TU6	105 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	PROSER1	Q86XN7	944 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	RASGEF1C	Q8N431	466 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	ARL14	Q8N4G2	192 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	DDHD1	Q8NEL9	900 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	ZCCHC14	Q8WYQ9	949 aa	Known RBP	11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	TIMM29	Q9BSF4	260 aa		11.73	□□□□□ -0.53
YBX3-217	ENST00000546164	CCDC86	Q9H6F5	360 aa	Known RBP	11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 38 ms