RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ADAMTSL2Q86TH1 951 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 PIM3Q86V86 326 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 PHYKPLQ8IUZ5 450 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 KBTBD2Q8IY47 623 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 OR56A4Q8NGH8 313 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 GDPD5Q8WTR4 605 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 ZNF296Q8WUU4 475 aaPredicted RBP9.8□□□□□ -0.84
SS18-205ENST00000542420 TWIST2Q8WVJ9 160 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 ZUFSPQ96AP4 578 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 DTNBP1Q96EV8 351 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 TRAPPC9Q96Q05 1148 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 FEM1AQ9BSK4 669 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 C8orf4Q9NR00 106 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 LATS2Q9NRM7 1088 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 TMEM181Q9P2C4 612 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 HCSTQ9UBK5 93 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 APPL1Q9UKG1 709 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 CROTQ9UKG9 612 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 RAB26Q9ULW5 256 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 DHRS7Q9Y394 339 aa9.8□□□□□ -0.84
SS18-205ENST00000542420 TRBV5-4A0A0C4DH59 114 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 TTC24A2A3L6 582 aaPredicted RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 H0Y626 953 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 IFRD1O00458 451 aaPredicted RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 DENRO43583 198 aaKnown RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 PQBP1O60828 265 aaKnown RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 TBL1XO60907 577 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 CLASP2O75122 1294 aaKnown RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 PGLSO95336 258 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 STAMBPO95630 424 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 ESRRBO95718 433 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 SLC4A1P02730 911 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 HSPA8P11142 646 aaKnown RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 ENO3P13929 434 aaPredicted RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 KCNC1P48547 511 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 APLP1P51693 650 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 RHOAP61586 193 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 SMAD3P84022 425 aaKnown RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 BNIP2Q12982 314 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 PEX6Q13608 980 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 PCBP2Q15366 365 aaKnown RBP eCLIP9.79□□□□□ -0.849e-6■□□□□ 8.7
SS18-205ENST00000542420 PTPRNQ16849 979 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 MMEL1Q495T6 779 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 GPR33Q49SQ1 333 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 MPPE1Q53F39 396 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 XKR7Q5GH72 579 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 ARMC12Q5T9G4 340 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 RNF220Q5VTB9 566 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 ZDHHC20Q5W0Z9 365 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 PAQR3Q6TCH7 311 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 CYHR1Q6ZMK1 362 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 TMEM150AQ86TG1 271 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 LDB1Q86U70 411 aaPredicted RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 TICAM1Q8IUC6 712 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 MIER2Q8N344 545 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 MINDY1Q8N5J2 469 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 HMGCLL1Q8TB92 370 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 PYDC1Q8WXC3 89 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 FUBP1Q96AE4 644 aaKnown RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 ISG20Q96AZ6 181 aaKnown RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 TMA16Q96EY4 203 aaKnown RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 MYO19Q96H55 970 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 TUBGCP5Q96RT8 1024 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 ZNF382Q96SR6 550 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 UHRF1Q96T88 793 aaPredicted RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 TRIM15Q9C019 465 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 CRISPLD2Q9H0B8 497 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 RNF38Q9H0F5 515 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 SDR39U1Q9NRG7 319 aaPredicted RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 GID8Q9NWU2 228 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 ABCD2Q9UBJ2 740 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 CD300AQ9UGN4 299 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 DNAJC15Q9Y5T4 150 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 UBA6A0AVT1 1052 aaPredicted RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 UBXN8O00124 270 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 PRRG1O14668 218 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 PRMT5O14744 637 aaPredicted RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 MRASO14807 208 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 LILRB3O75022 631 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 ECI2O75521 394 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 FGF19O95750 216 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 TSPAN12O95859 305 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 ZNF7P17097 686 aaPredicted RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 MSH3P20585 1137 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 FMO4P31512 558 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 PGGT1BP53609 377 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 SH3BP2P78314 561 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 TWF1Q12792 350 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 PTPRSQ13332 1948 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 PDCD4Q53EL6 469 aaKnown RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 AGKQ53H12 422 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 CTSL3PQ5NE16 218 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 TCHHL1Q5QJ38 904 aaPredicted RBP9.79□□□□□ -0.84
SS18-205ENST00000542420 RNF111Q6ZNA4 994 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 CD200R1Q8TD46 325 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 SCLYQ96I15 445 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 LRGUKQ96M69 825 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 NSMCE3Q96MG7 304 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 GPR21Q99679 349 aa9.79□□□□□ -0.84
SS18-205ENST00000542420 GPATCH1Q9BRR8 931 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms