RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 DDX56Q9NY93 547 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-205ENST00000535452 KCNK6Q9Y257 313 aa13.12□□□□□ -0.31
CLSTN3-205ENST00000535452 LRP4O75096 1905 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 KCNK1O00180 336 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 KMOO15229 486 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 MTSS1O43312 755 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 SPOPO43791 374 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 RASSF9O75901 435 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 WISP1O95388 367 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 KRT1P04264 644 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 TMEM253P0C7T8 217 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 FAM87AP0C7U9 286 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 FGF3P11487 239 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 KDELR1P24390 212 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 IL4RP24394 825 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 UGT1A3P35503 534 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 FOXM1Q08050 763 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 PPIDQ08752 370 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 TFDP2Q14188 446 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 GALNT3Q14435 633 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 KLHL35Q6PF15 583 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 ZNF761Q86XN6 746 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 DTX1Q86Y01 620 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 CXorf40BQ96DE9 158 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 COX14Q96I36 57 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 AGAP3Q96P47 875 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 XPO4Q9C0E2 1151 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 SLC25A18Q9H1K4 315 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 B3GALT1Q9Y5Z6 326 aa13.11□□□□□ -0.31
CLSTN3-205ENST00000535452 SSU72P8A0A1W2PR75 194 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 NUAK1O60285 661 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 GYPCP04921 128 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 TNNT1P13805 278 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 IDSP22304 550 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 SLC1A1P43005 524 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 ARL4DP49703 201 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 CSRP3P50461 194 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 IFI35P80217 286 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 GBE1Q04446 702 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 TBR1Q16650 682 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 QPCTQ16769 361 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 HENMT1Q5T8I9 393 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 ANKS6Q68DC2 871 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 IYDQ6PHW0 289 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 LRRTM4Q86VH4 590 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 VSIG1Q86XK7 387 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 RHOT1Q8IXI2 618 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 RBM12BQ8IXT5 1001 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 TRAM1L1Q8N609 369 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 ESX1Q8N693 406 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 BRSK1Q8TDC3 778 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 NKD1Q969G9 470 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 RNF157Q96PX1 679 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 SEMA4CQ9C0C4 833 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 OR2AG1Q9H205 316 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 MAGEE1Q9HCI5 957 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 TRIM39Q9HCM9 518 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 KLC4Q9NSK0 619 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 GEMIN8Q9NWZ8 242 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 DTLQ9NZJ0 730 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 CPNE7Q9UBL6 633 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 PRKAB1Q9Y478 270 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 PLEKHM1Q9Y4G2 1056 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 BPTFQ12830 3046 aa13.1□□□□□ -0.31
CLSTN3-205ENST00000535452 A0A0A6YYK5 440 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 ZNF487B1APH4 448 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 VEGFDO43915 354 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 CDK14O94921 469 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 SOD1P00441 154 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 FUCA1P04066 466 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 CCNYL3P0C7X3 344 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 NR2C2P49116 596 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 CDK18Q07002 472 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 SKOR2Q2VWA4 1001 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 ATP13A4Q4VNC1 1196 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 CCDC181Q5TID7 509 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 CRTC3Q6UUV7 619 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 ZNF574Q6ZN55 896 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 TMPRSS9Q7Z410 1059 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 TRAPPC5Q8IUR0 188 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 RASGRP3Q8IV61 690 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 ARRDC2Q8TBH0 407 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 FAF2Q96CS3 445 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 STAMBPL1Q96FJ0 436 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 ZDHHC12Q96GR4 267 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 NSMCE3Q96MG7 304 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 AGAP2Q99490 1192 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 SLC25A51Q9H1U9 297 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 FBXO8Q9NRD0 319 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 POT1Q9NUX5 634 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 TBC1D29Q9UFV1 150 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 SHOC2Q9UQ13 582 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 ZNF711Q9Y462 761 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 UNC13CQ8NB66 2214 aa13.09□□□□□ -0.31
CLSTN3-205ENST00000535452 LILRA5A6NI73 299 aa13.08□□□□□ -0.32
CLSTN3-205ENST00000535452 TOX3O15405 576 aaPredicted RBP13.08□□□□□ -0.32
CLSTN3-205ENST00000535452 MAP3K7O43318 606 aa13.08□□□□□ -0.32
CLSTN3-205ENST00000535452 KCNJ13O60928 360 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms