RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 KLRG2A4D1S0 409 aaPredicted RBP15.32■□□□□ 0.04
PTPRF-206ENST00000429895 PEX10O60683 326 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 ITGB5P18084 799 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 CMPK1P30085 196 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 ICAM3P32942 547 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 ACTR3P61158 418 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 DSC2Q02487 901 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 ELP6Q0PNE2 266 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 ULK3Q6PHR2 472 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 DNAJC19Q96DA6 116 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 IKZF4Q9H2S9 585 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 LRRC19Q9H756 370 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 LRTM1Q9HBL6 345 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 ING3Q9NXR8 418 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 DHRS7Q9Y394 339 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 IRAK3Q9Y616 596 aa15.32■□□□□ 0.04
PTPRF-206ENST00000429895 ZC3H13Q5T200 1668 aaKnown RBP15.32■□□□□ 0.04
PTPRF-206ENST00000429895 PPRC1Q5VV67 1664 aaKnown RBP15.32■□□□□ 0.04
PTPRF-206ENST00000429895 CCL22O00626 93 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 OR1F1O43749 312 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SNAP91O60641 907 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 CASP7P55210 303 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SLC20A2Q08357 652 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 DENND5AQ6IQ26 1287 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SLC30A6Q6NXT4 461 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 POTEHQ6S545 545 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SLC4A11Q8NBS3 891 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 ACMSDQ8TDX5 336 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 CHID1Q9BWS9 393 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 RAB21Q9UL25 225 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SLC31A1O15431 190 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 MFSD11O43934 449 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SERPINA6P08185 405 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 PAX3P23760 479 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 MNDAP41218 407 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 CLCNKBP51801 687 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 MYBPC3Q14896 1274 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 GFOD2Q3B7J2 385 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 ZDHHC20Q5W0Z9 365 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 LRRC17Q8N6Y2 441 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 FAM81AQ8TBF8 368 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 TCF12Q99081 682 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 NKIRAS2Q9NYR9 191 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SIRPGQ9P1W8 387 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SLC17A7Q9P2U7 560 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SORCS3Q9UPU3 1222 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 CAPGP40121 348 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 ECM1Q16610 540 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 PARP15Q460N3 678 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 PLEKHG4Q58EX7 1191 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 FAM131AQ6UXB0 335 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SLC9A9Q8IVB4 645 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 TTC29Q8NA56 475 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-206ENST00000429895 OR2T12Q8NG77 320 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 HERVK_113Q902F9 699 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 AP3S1Q92572 193 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 FATE1Q969F0 183 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 C1GALT1C1Q96EU7 318 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SMIM28A0A1B0GU29 152 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 HMGB3O15347 200 aaKnown RBP15.31■□□□□ 0.04
PTPRF-206ENST00000429895 ENTPD5O75356 428 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 LRIG2O94898 1065 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 IFNA6P05013 189 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 ITGB3BPQ13352 177 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-206ENST00000429895 RGS21Q2M5E4 152 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 CHST15Q7LFX5 561 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-206ENST00000429895 OR2L5Q8NG80 312 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 GPR21Q99679 349 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 TBC1D10AQ9BXI6 508 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 WDR55Q9H6Y2 383 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-206ENST00000429895 CHMP1AQ9HD42 196 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-206ENST00000429895 DYTNA2CJ06 578 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 CPSF4LA6NMK7 179 aaKnown RBP15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SNX3O60493 162 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 NR2F6P10588 404 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 ACADLP28330 430 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 CTSOP43234 321 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-206ENST00000429895 RIPK1Q13546 671 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 UBXN2BQ14CS0 331 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 ZACNQ401N2 412 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 LRRC73Q5JTD7 316 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SHC3Q92529 594 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 EBPLQ9BY08 206 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 ABCB9Q9NP78 766 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 PDP1Q9P0J1 537 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-206ENST00000429895 SYNPO2Q9UMS6 1093 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 PHF24Q9UPV7 400 aa15.31■□□□□ 0.04
PTPRF-206ENST00000429895 COL5A2P05997 1499 aaPredicted RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 PRKAR1AP10644 381 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 ATXN1P54253 815 aaKnown RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 HSPB3Q12988 150 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 LARS2Q15031 903 aaKnown RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 PTGES3Q15185 160 aaKnown RBP15.3■□□□□ 0.04
PTPRF-206ENST00000429895 SNAPC1Q16533 368 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 RNF43Q68DV7 783 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 SLC24A5Q71RS6 500 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 OR52J3Q8NH60 311 aa15.3■□□□□ 0.04
PTPRF-206ENST00000429895 UPF1Q92900 1129 aaKnown RBP eCLIP15.3■□□□□ 0.041e-7■■■■■ 44.5
PTPRF-206ENST00000429895 PPM1MQ96MI6 270 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms