RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 UGT3A1Q6NUS8 523 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 CYS1Q717R9 158 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 LARP4Q71RC2 724 aaKnown RBP eCLIP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 GTF2IRD2Q86UP8 949 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 VPS37AQ8NEZ2 397 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TRUB1Q8WWH5 349 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 SREK1Q8WXA9 508 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TMBIM1Q969X1 311 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 FKBP10Q96AY3 582 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 LRRC58Q96CX6 371 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 PABPC5Q96DU9 382 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 C19orf60Q96EN9 201 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 CENPNQ96H22 339 aaPredicted RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 FAR2Q96K12 515 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 MYRFLQ96LU7 910 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 NECTIN4Q96NY8 510 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 GMLQ99445 158 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 FEM1AQ9BSK4 669 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TBCDQ9BTW9 1192 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 EFHD1Q9BUP0 239 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TP63Q9H3D4 680 aaPredicted RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 NXF3Q9H4D5 531 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 RHOJQ9H4E5 214 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 ERVK-18Q9QC07 812 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 ZNF229Q9UJW7 825 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 PSME2Q9UL46 239 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 VWA7Q9Y334 891 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 LRRC37AA6NMS7 1700 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 LOXHD1Q8IVV2 1947 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TCRBV5S2A0A599 114 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TNPO2O14787 897 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 DCLK1O15075 740 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 ANGPT2O15123 496 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 CAPN5O15484 640 aaPredicted RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TBX1O43435 398 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 NOL3O60936 208 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 IPO13O94829 963 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 KCNK2O95069 426 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 USP17L7P0C7H9 530 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 SNRPBP14678 240 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 IL10P22301 178 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 EPHA2P29317 976 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 IL12AP29459 219 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 NOS2P35228 1153 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 ARCN1P48444 511 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 NR2C2P49116 596 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 PCYT1AP49585 367 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 AFF1P51825 1210 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 EFNA5P52803 228 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 AP3M2P53677 418 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TPD52P55327 224 aaPredicted RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TPI1P60174 286 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 ADARB1P78563 741 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 SOX4Q06945 474 aaPredicted RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 CD47Q08722 323 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 EIF2B5Q13144 721 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 HERC3Q15034 1050 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 CTF1Q16619 201 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 C18orf21Q32NC0 220 aaPredicted RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TECRLQ5HYJ1 363 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 COLEC12Q5KU26 742 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 KIAA0319Q5VV43 1072 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 FAAH2Q6GMR7 532 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 THOC7Q6I9Y2 204 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 C8orf82Q6P1X6 216 aaPredicted RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 USP43Q70EL4 1123 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 PAGE2Q7Z2X7 111 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 BNIPLQ7Z465 357 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TRIM46Q7Z4K8 759 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 MILR1Q7Z6M3 343 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 ALDH16A1Q8IZ83 802 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 MFSD2AQ8NA29 543 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TRPV3Q8NET8 790 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 CENPIQ92674 756 aaPredicted RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 GLMNQ92990 594 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 PPP1R14BQ96C90 147 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 HDAC11Q96DB2 347 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 DMRTB1Q96MA1 342 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 SPATA33Q96N06 139 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 KCTD14Q9BQ13 255 aaPredicted RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 SLC25A23Q9BV35 468 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 TRIT1Q9H3H1 467 aaKnown RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 ACAD9Q9H845 621 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 MEAF6Q9HAF1 191 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 ARMC1Q9NVT9 282 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 PKD2L2Q9NZM6 624 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 VTI1BQ9UEU0 232 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 RGS17Q9UGC6 210 aaPredicted RBP5.39□□□□□ -1.55
ATG4A-204ENST00000372246 GNPTGQ9UJJ9 305 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 ITGB1BP2Q9UKP3 347 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 ADAM28Q9UKQ2 775 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 PCDHGA11Q9Y5H2 935 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 FER1L6Q2WGJ9 1857 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 MICAL3Q7RTP6 2002 aa5.39□□□□□ -1.55
ATG4A-204ENST00000372246 NRCAMQ92823 1304 aa5.38□□□□□ -1.55
ATG4A-204ENST00000372246 IGKV6D-21A0A0A0MT36 114 aa5.38□□□□□ -1.55
ATG4A-204ENST00000372246 TRPC5OSA6NMA1 111 aa5.38□□□□□ -1.55
ATG4A-204ENST00000372246 CLDN25C9JDP6 229 aa5.38□□□□□ -1.55
ATG4A-204ENST00000372246 UPK1AO00322 258 aa5.38□□□□□ -1.55
ATG4A-204ENST00000372246 MSI1O43347 362 aaKnown RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms