RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 HADHAP40939 763 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 LAMB3Q13751 1172 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 GTF2H3Q13889 308 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 TAF1AQ15573 450 aaPredicted RBP19.21■□□□□ 0.67
UPF1-212ENST00000601689 SMAD1Q15797 465 aaKnown RBP19.21■□□□□ 0.67
UPF1-212ENST00000601689 DRICH1Q6PGQ1 229 aaPredicted RBP19.21■□□□□ 0.67
UPF1-212ENST00000601689 GPR26Q8NDV2 337 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 DTX3LQ8TDB6 740 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 GLYATL1Q969I3 302 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 RTP4Q96DX8 246 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 AGAP2Q99490 1192 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 ZCCHC2Q9C0B9 1178 aaKnown RBP19.21■□□□□ 0.67
UPF1-212ENST00000601689 TRIM39Q9HCM9 518 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 SIRPGQ9P1W8 387 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 APPL1Q9UKG1 709 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 PADI4Q9UM07 663 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 DRG1Q9Y295 367 aaKnown RBP19.21■□□□□ 0.67
UPF1-212ENST00000601689 TMEM98Q9Y2Y6 226 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 SPO11Q9Y5K1 396 aa19.21■□□□□ 0.67
UPF1-212ENST00000601689 CXCR5P32302 372 aa19.2■□□□□ 0.66
UPF1-212ENST00000601689 POLD2P49005 469 aa19.2■□□□□ 0.66
UPF1-212ENST00000601689 CCDC173Q0VFZ6 552 aa19.2■□□□□ 0.66
UPF1-212ENST00000601689 OASLQ15646 514 aaKnown RBP19.2■□□□□ 0.66
UPF1-212ENST00000601689 MARK2Q7KZI7 788 aaKnown RBP19.2■□□□□ 0.66
UPF1-212ENST00000601689 EFL1Q7Z2Z2 1120 aaKnown RBP19.2■□□□□ 0.66
UPF1-212ENST00000601689 MAPK15Q8TD08 544 aa19.2■□□□□ 0.66
UPF1-212ENST00000601689 GPBAR1Q8TDU6 330 aa19.2■□□□□ 0.66
UPF1-212ENST00000601689 APOL2Q9BQE5 337 aa19.2■□□□□ 0.66
UPF1-212ENST00000601689 IL17CQ9P0M4 197 aa19.2■□□□□ 0.66
UPF1-212ENST00000601689 PTPRBP23467 1997 aa19.2■□□□□ 0.66
UPF1-212ENST00000601689 KNTC1P50748 2209 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 GLYATL1P3A0A0U1RQE8 302 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 FAM221BA6H8Z2 402 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 FADS2P1A8MWK0 482 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 AURKAO14965 403 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 VEGFDO43915 354 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 SPINK2P20155 84 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 ADRA1AP35348 466 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 ADCY8P40145 1251 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 GDF10P55107 478 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 TRIM74Q86UV6 250 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 REXO1L1PQ8IX06 675 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 PDCD7Q8N8D1 485 aaKnown RBP19.19■□□□□ 0.66
UPF1-212ENST00000601689 DNAAF3Q8N9W5 541 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 EID2BQ96D98 161 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 SCARF2Q96GP6 870 aaPredicted RBP19.19■□□□□ 0.66
UPF1-212ENST00000601689 VPS35Q96QK1 796 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 WDR24Q96S15 920 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 C19orf43Q9BQ61 176 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 ARNT2Q9HBZ2 717 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 KLK13Q9UKR3 277 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 CLCA2Q9UQC9 943 aa19.19■□□□□ 0.66
UPF1-212ENST00000601689 ARHGEF17Q96PE2 2063 aaPredicted RBP19.18■□□□□ 0.66
UPF1-212ENST00000601689 GOLGA6L10A0A0M3HER8 536 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 B4DGG1 531 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 AP3B1O00203 1094 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 METTL18O95568 372 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 AP2A1O95782 977 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 ATP1A1P05023 1023 aaKnown RBP19.18■□□□□ 0.66
UPF1-212ENST00000601689 CELA2BP08218 269 aaPredicted RBP19.18■□□□□ 0.66
UPF1-212ENST00000601689 SLC2A4P14672 509 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 ACTR1BP42025 376 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 ACTR1AP61163 376 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 PYCR3Q53H96 274 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 LDLRAP1Q5SW96 308 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 HES3Q5TGS1 186 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 SLC30A9Q6PML9 568 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 PPP1R21Q6ZMI0 780 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 CHST15Q7LFX5 561 aaPredicted RBP19.18■□□□□ 0.66
UPF1-212ENST00000601689 SLC35F3Q8IY50 421 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 CACTIN-AS1Q8N1I8 211 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 SLC35F6Q8N357 371 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 TTC30BQ8N4P2 665 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 ZDHHC1Q8WTX9 485 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 KCNF1Q9H3M0 494 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 STN1Q9H668 368 aaKnown RBP19.18■□□□□ 0.66
UPF1-212ENST00000601689 RAB6BQ9NRW1 208 aa19.18■□□□□ 0.66
UPF1-212ENST00000601689 ZFC3H1O60293 1989 aaKnown RBP19.18■□□□□ 0.66
UPF1-212ENST00000601689 GRID2O43424 1007 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 USP12O75317 370 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 CDK14O94921 469 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 TOP3BO95985 862 aaKnown RBP19.17■□□□□ 0.66
UPF1-212ENST00000601689 GLB1P16278 677 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 VCLP18206 1134 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 CTBSQ01459 385 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 CDH17Q12864 832 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 SPARCL1Q14515 664 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 GUSBP11Q6P575 273 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 FAM151BQ6UXP7 276 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 CCNI2Q6ZMN8 369 aaPredicted RBP19.17■□□□□ 0.66
UPF1-212ENST00000601689 DEPDC7Q96QD5 511 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 GORASP1Q9BQQ3 440 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 OR2AG1Q9H205 316 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 ETNK1Q9HBU6 452 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 TAAR2Q9P1P5 351 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 CNOT6Q9ULM6 557 aaKnown RBP19.17■□□□□ 0.66
UPF1-212ENST00000601689 WASF3Q9UPY6 502 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 ARL5AQ9Y689 179 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 SCN8AQ9UQD0 1980 aa19.17■□□□□ 0.66
UPF1-212ENST00000601689 NCOR2Q9Y618 2525 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms