RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 FZD3Q9NPG1 666 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 HPS4Q9NQG7 708 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SETD4Q9NVD3 440 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 BFARQ9NZS9 450 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 TLL2Q9Y6L7 1015 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 METTL15A6NJ78 407 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 HRO43593 1189 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 HTR3AP46098 478 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 GJA8P48165 433 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SCNN1GP51170 649 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 KEAP1Q14145 624 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 MXD4Q14582 209 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CDKL4Q5MAI5 379 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 NECAB2Q7Z6G3 386 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 FAM35AQ86V20 835 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SHCBP1Q8NEM2 672 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 PRMT6Q96LA8 375 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 RIPOR3Q96MK2 946 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 MFRPQ9BY79 579 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CLPBQ9H078 707 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SCAF8Q9UPN6 1271 aaKnown RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 PCDHGA8Q9Y5G5 932 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ANKRD34BA5PLL1 514 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SAC3D1A6NKF1 404 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 TMX2-CTNND1H3BSU7 103 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 STX16-NPEPL1H3BU86 382 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SOCS2O14508 198 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 STX16O14662 325 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 PDGFRAP16234 1089 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 PAMP19021 973 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CCNA2P20248 432 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 GSK3BP49841 420 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF33BQ06732 778 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 IMPG1Q17R60 797 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF699Q32M78 642 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 DCAF4L1Q3SXM0 396 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ATAD3BQ5T9A4 648 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 TSEN54Q7Z6J9 526 aaKnown RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ISCA2Q86U28 154 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SVOPQ8N4V2 548 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 GLT1D1Q96MS3 346 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 EFHD1Q9BUP0 239 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 POLR3FQ9H1D9 316 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 COPS7BQ9H9Q2 264 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ACSS2Q9NR19 701 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 PRMT7Q9NVM4 692 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SIRT5Q9NXA8 310 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 PKD2L2Q9NZM6 624 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 GRIP1Q9Y3R0 1128 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 MTF2Q9Y483 593 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ADAMTSL1Q8N6G6 1762 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 DSPPQ9NZW4 1301 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 MROH6A6NGR9 719 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 M0QYV0 167 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SEMA3DO95025 777 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 STMN1P16949 149 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CDH3P22223 829 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SOX11P35716 441 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 LIMS1P48059 325 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ERFP50548 548 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 EPHB1P54762 984 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 EPHA4P54764 986 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 TAS2R39P59534 338 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SLC25A52Q3SY17 297 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 TMEM201Q5SNT2 666 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 VWA5B1Q5TIE3 1220 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 LAIR1Q6GTX8 287 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ERAP2Q6P179 960 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 GPR141Q7Z602 305 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 RNF139Q8WU17 664 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 RAD21L1Q9H4I0 556 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 WDR55Q9H6Y2 383 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 DYRK4Q9NR20 520 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 PCDHGA10Q9Y5H3 936 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 OR5K3A6NET4 321 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 NEMP1O14524 444 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SNX2O60749 519 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF623O75123 536 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CDK14O94921 469 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 OR4F21O95013 312 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 NAGLUP54802 743 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CSNK2BP67870 215 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CDH17Q12864 832 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 TOP3AQ13472 1001 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 IHHQ14623 411 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 AASDHQ4L235 1098 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 PPP6R3Q5H9R7 873 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 OR4F3Q6IEY1 312 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 EID3Q8N140 333 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 SLC25A41Q8N5S1 370 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 TXNDC5Q8NBS9 432 aaKnown RBP5.33□□□□□ -1.56
SYNE1-220ENST00000471834 IL17RDQ8NFM7 739 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CPB2Q96IY4 423 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 NSMCE3Q96MG7 304 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 FAM118BQ9BPY3 351 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 NIPAL2Q9H841 368 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 CCNB1IP1Q9NPC3 277 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 TMEM39AQ9NV64 488 aa5.33□□□□□ -1.56
SYNE1-220ENST00000471834 PTTG3PQ9NZH4 202 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms