RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ELMO2Q96JJ3 720 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 KCNA7Q96RP8 456 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 TUBA1CQ9BQE3 449 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 RHNO1Q9BSD3 238 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 NAT9Q9BTE0 207 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 MLPHQ9BV36 600 aaPredicted RBP13.49□□□□□ -0.25
SKA3-201ENST00000298260 MRPL4Q9BYD3 311 aaKnown RBP13.49□□□□□ -0.25
SKA3-201ENST00000298260 DEFB129Q9H1M3 183 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 CAB39Q9Y376 341 aaPredicted RBP13.49□□□□□ -0.25
SKA3-201ENST00000298260 UGT2A1Q9Y4X1 527 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 SPATA31C2B4DYI2 1134 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 SNPHO15079 494 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 TBX1O43435 398 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 CXCR2P25025 360 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 TUFMP49411 452 aaKnown RBP13.49□□□□□ -0.25
SKA3-201ENST00000298260 RABGGTBP53611 331 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 TPD52P55327 224 aaPredicted RBP13.49□□□□□ -0.25
SKA3-201ENST00000298260 E2F2Q14209 437 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 CCDC58Q4VC31 144 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 RBM20Q5T481 1227 aaKnown RBP13.49□□□□□ -0.25
SKA3-201ENST00000298260 C4orf22Q6V702 233 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 PAGE2Q7Z2X7 111 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 LINC00523Q86TU6 105 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 ATG4CQ96DT6 458 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 NRBF2Q96F24 287 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 SPATA17Q96L03 361 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 CLSTN3Q9BQT9 956 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 CENPOQ9BU64 300 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 CHID1Q9BWS9 393 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 SLC38A10Q9HBR0 1119 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 NEK6Q9HC98 313 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 RNF146Q9NTX7 359 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 USP3Q9Y6I4 520 aa13.49□□□□□ -0.25
SKA3-201ENST00000298260 QSER1Q2KHR3 1735 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 SHROOM3Q8TF72 1996 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 FAM95CA0A1B0GW59 222 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 FAM72CH0Y354 149 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 M0R3G1 203 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 UGT2B11O75310 529 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 LDLRP01130 860 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 UGT2B4P06133 528 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 VDRP11473 427 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 GPX3P22352 226 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 GTF2E2P29084 291 aaKnown RBP13.48□□□□□ -0.25
SKA3-201ENST00000298260 NR2C2P49116 596 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 CLK3P49761 638 aaKnown RBP13.48□□□□□ -0.25
SKA3-201ENST00000298260 GSK3BP49841 420 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 HNRNPFP52597 415 aaKnown RBP13.48□□□□□ -0.25
SKA3-201ENST00000298260 FOXA1P55317 472 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 LAMC2Q13753 1193 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 MAPRE2Q15555 327 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 FAM72AQ5TYM5 149 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 FAM72DQ6L9T8 149 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 CCDC81Q6ZN84 652 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 RALGPS2Q86X27 583 aaPredicted RBP13.48□□□□□ -0.25
SKA3-201ENST00000298260 FAM72BQ86X60 149 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 FAM83FQ8NEG4 500 aaPredicted RBP13.48□□□□□ -0.25
SKA3-201ENST00000298260 SH3RF2Q8TEC5 729 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 CEP295NLQ96MC4 621 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 DNAI2Q9GZS0 605 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 SMOC2Q9H3U7 446 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 TOR3AQ9H497 397 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 MINDY3Q9H8M7 445 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 AKTIPQ9H8T0 292 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 SSX4O60224 188 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 CHRNB1P11230 501 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 CDH1P12830 882 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 PRKACGP22612 351 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 ARL4AP40617 200 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 KCNC1P48547 511 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 ATP6V0D1P61421 351 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 TMC5Q6UXY8 1006 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 RFPL4BQ6ZWI9 263 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 ADCK1Q86TW2 530 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 OR7A2PQ8NGA2 310 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 HPDLQ96IR7 371 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 TEX37Q96LM6 180 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 MCMBPQ9BTE3 642 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 ATXN3LQ9H3M9 355 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 MEAF6Q9HAF1 191 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 NTN4Q9HB63 628 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 TRPV5Q9NQA5 729 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 ENPP5Q9UJA9 477 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 UTS2RQ9UKP6 389 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 BTRCQ9Y297 605 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 NME7Q9Y5B8 376 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 PCDHGA11Q9Y5H2 935 aa13.48□□□□□ -0.25
SKA3-201ENST00000298260 MICAL3Q7RTP6 2002 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 A8MT66 165 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 ANGPT2O15123 496 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 SUPT7LO94864 414 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 LRIG2O94898 1065 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 PTPN3P26045 913 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 ADORA2BP29275 332 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 AP3M2P53677 418 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 HABP4Q5JVS0 413 aaKnown RBP13.47□□□□□ -0.25
SKA3-201ENST00000298260 LAIR2Q6ISS4 152 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 OTOP3Q7RTS5 596 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 GALNT13Q8IUC8 556 aa13.47□□□□□ -0.25
SKA3-201ENST00000298260 ATP6V0D2Q8N8Y2 350 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms