RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 FMR1Q06787 632 aaKnown RBP eCLIP13.93□□□□□ -0.182e-8■□□□□ 10.2
CCDC88A-201ENST00000263630 METTL21CQ5VZV1 264 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 RAET1GQ6H3X3 334 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 ZSWIM3Q96MP5 696 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 MAP3K14Q99558 947 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 TCF7L1Q9HCS4 588 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 COPS7AQ9UBW8 275 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 A0A075B6Q4 140 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 TRIM64CA6NLI5 447 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 CHADO15335 359 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 RPL21P46778 160 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 NSMCE3Q96MG7 304 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 SLC39A3Q9BRY0 314 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 TMEM121BQ9BXQ6 578 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 PLAGL2Q9UPG8 496 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 REXO2Q9Y3B8 237 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 ATP7AQ04656 1500 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 IPO13O94829 963 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 CYP4B1P13584 511 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 ASMTP46597 345 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 PROSER3Q2NL68 480 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 SSX6Q7RTT6 188 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 TIGD4Q8IY51 512 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 SLC44A3Q8N4M1 653 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 MREGQ8N565 214 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 MRPL9Q9BYD2 267 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 TREM1Q9NP99 234 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 CISHQ9NSE2 258 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 DNAAF2Q9NVR5 837 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 TRMUO75648 421 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 CCR3P51677 355 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 SLC12A3P55017 1021 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 SMG7Q92540 1137 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 PDLIM2Q96JY6 352 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 HSBP1L1C9JCN9 74 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 BCKDKO14874 412 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 SERPINA6P08185 405 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 NDUFA9Q16795 377 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 RANBP3LQ86VV4 465 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 ACMSDQ8TDX5 336 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 ALG9Q9H6U8 611 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 TUBE1Q9UJT0 475 aa13.93□□□□□ -0.18
CCDC88A-201ENST00000263630 MTHFRP42898 656 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 VLDLRP98155 873 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 SLC30A6Q6NXT4 461 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 LINGO2Q7L985 606 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 ACTL9Q8TC94 416 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 SETD4Q9NVD3 440 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 C14orf166Q9Y224 244 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 ANPEPP15144 967 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 MAGEA6P43360 314 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 RAB15P59190 212 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 IQSEC1Q6DN90 963 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 NUP54Q7Z3B4 507 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 SPATA20Q8TB22 786 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 RCOR3Q9P2K3 495 aaPredicted RBP13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 MATN4O95460 622 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 ZNF823P16415 610 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 RAB39AQ14964 217 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 PCDH10Q9P2E7 1040 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 CYP2B6P20813 491 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 APLP1P51693 650 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 COLEC12Q5KU26 742 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 LIPMQ5VYY2 423 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 CES5AQ6NT32 575 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 TRPM4Q8TD43 1214 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 KLHL15Q96M94 604 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 TPK1Q9H3S4 243 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 ASB8Q9H765 288 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 DNAJC28Q9NX36 388 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 CORO1CQ9ULV4 474 aaPredicted RBP13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 TBC1D3BA6NDS4 549 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 COX4I1P13073 169 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 GALK1P51570 392 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 KCNH7Q9NS40 1196 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 RGS17Q9UGC6 210 aaPredicted RBP13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 DNMT3LQ9UJW3 386 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 H3BM21 787 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 DDX3YO15523 660 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 NAGLUP54802 743 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 CASP9P55211 416 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 CYP4F8P98187 520 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 RAB12Q6IQ22 244 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 BRINP2Q9C0B6 783 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 MAGEE1Q9HCI5 957 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 PER2O15055 1255 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 TIE1P35590 1138 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 FAM46CQ5VWP2 391 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 SUSD4Q5VX71 490 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 SLC47A2Q86VL8 602 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 OR2AJ1Q8NGZ0 328 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 ZNF700Q9H0M5 742 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 H7C2Y5 167 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 SLC35G4P0C7Q5 338 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 ALDH4A1P30038 563 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 PTPN11Q06124 597 aaPredicted RBP13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 SCGB2A2Q13296 93 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 PCID2Q5JVF3 399 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 SATL1Q86VE3 508 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 ZCCHC9Q8N567 271 aaKnown RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms