RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PRG3Q9Y2Y8 225 aaPredicted RBP21.26■□□□□ 0.99
VPS28-205ENST00000526204 PLXNA3P51805 1871 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 SLC12A8A0AV02 714 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 KIF3CO14782 793 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 TRIM24O15164 1050 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 NRP2O60462 931 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 CRTAMO95727 393 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 FGF4P08620 206 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 OGNP20774 298 aaKnown RBP21.25■□□□□ 0.99
VPS28-205ENST00000526204 KPNA1P52294 538 aaPredicted RBP21.25■□□□□ 0.99
VPS28-205ENST00000526204 FAM189BP81408 668 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 BLOC1S5Q8TDH9 187 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 PTERQ96BW5 349 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 TLL2Q9Y6L7 1015 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 MRASO14807 208 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 PMLP29590 882 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 RHDQ02161 417 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 TRIM32Q13049 653 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 SAMD4BQ5PRF9 694 aaKnown RBP21.25■□□□□ 0.99
VPS28-205ENST00000526204 CWF19L1Q69YN2 538 aaKnown RBP21.25■□□□□ 0.99
VPS28-205ENST00000526204 CLEC6AQ6EIG7 209 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 ZNF549Q6P9A3 640 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 PAOXQ6QHF9 649 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 PNPLA1Q8N8W4 532 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 TMEM102Q8N9M5 508 aaPredicted RBP21.25■□□□□ 0.99
VPS28-205ENST00000526204 OR52K2Q8NGK3 314 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 DNAJC1Q96KC8 554 aaKnown RBP21.25■□□□□ 0.99
VPS28-205ENST00000526204 TRIM4Q9C037 500 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 CROTQ9UKG9 612 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 AP4S1Q9Y587 144 aa21.25■□□□□ 0.99
VPS28-205ENST00000526204 BPTFQ12830 3046 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 SMIM31A0A1B0GVY4 71 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 MOXD2PA6NHM9 499 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 SLC4A1P02730 911 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 SERPINF2P08697 491 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 GSTT1P30711 240 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 ATXN3P54252 364 aaPredicted RBP21.24■□□□□ 0.99
VPS28-205ENST00000526204 TAF10Q12962 218 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 CNPY1Q3B7I2 92 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 UGT3A2Q3SY77 523 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 FAM156AQ8NDB6 213 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 GPR152Q8TDT2 470 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 ROPN1LQ96C74 230 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 EPB41L1Q9H4G0 881 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 CATSPERZQ9NTU4 200 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 COMMD8Q9NX08 183 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 ARL5AQ9Y689 179 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 AP4B1Q9Y6B7 739 aa21.24■□□□□ 0.99
VPS28-205ENST00000526204 CCDC162PA2VCL2 907 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 BBIP1A8MTZ0 92 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 H0YJX3 145 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 HMBSP08397 361 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 SLC10A3P09131 477 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 ACVRL1P37023 503 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 SREBF2Q12772 1141 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 MRPL58Q14197 206 aaKnown RBP21.23■□□□□ 0.99
VPS28-205ENST00000526204 CYHR1Q6ZMK1 362 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 CIR1Q86X95 450 aaPredicted RBP21.23■□□□□ 0.99
VPS28-205ENST00000526204 SPNS2Q8IVW8 549 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 BBS5Q8N3I7 341 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 TTC9BQ8N6N2 239 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 PCYOX1LQ8NBM8 494 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 OR4L1Q8NH43 312 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 NCSTNQ92542 709 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 DUS3LQ96G46 650 aaKnown RBP21.23■□□□□ 0.99
VPS28-205ENST00000526204 SH3GL3Q99963 347 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 TFB2MQ9H5Q4 396 aaKnown RBP21.23■□□□□ 0.99
VPS28-205ENST00000526204 POLR3BQ9NW08 1133 aaPredicted RBP21.23■□□□□ 0.99
VPS28-205ENST00000526204 CD300AQ9UGN4 299 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 SLC4A7Q9Y6M7 1214 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 MIA3Q5JRA6 1907 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 RNASEH2AO75792 299 aaKnown RBP21.23■□□□□ 0.99
VPS28-205ENST00000526204 SRP72O76094 671 aaKnown RBP21.23■□□□□ 0.99
VPS28-205ENST00000526204 CKBP12277 381 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 ZNF37AP17032 561 aaPredicted RBP21.23■□□□□ 0.99
VPS28-205ENST00000526204 ALG1LQ6GMV1 187 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 C8orf82Q6P1X6 216 aaPredicted RBP21.23■□□□□ 0.99
VPS28-205ENST00000526204 SPATA17Q96L03 361 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 ARHGAP39Q9C0H5 1083 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 RETREG1Q9H6L5 497 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 INTS10Q9NVR2 710 aaKnown RBP21.23■□□□□ 0.99
VPS28-205ENST00000526204 TMEM181Q9P2C4 612 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 MTF2Q9Y483 593 aaPredicted RBP21.23■□□□□ 0.99
VPS28-205ENST00000526204 DNAH12Q6ZR08 3092 aa21.23■□□□□ 0.99
VPS28-205ENST00000526204 TTC3P53804 2025 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 DOCK4Q8N1I0 1966 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 STC1P52823 247 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 SH3BP2P78314 561 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 TIAL1Q01085 375 aaKnown RBP eCLIP21.22■□□□□ 0.99
VPS28-205ENST00000526204 IL23RQ5VWK5 629 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 SAPCD2Q86UD0 394 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 AHI1Q8N157 1196 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 PTGR2Q8N8N7 351 aaPredicted RBP21.22■□□□□ 0.99
VPS28-205ENST00000526204 ATP6V1E2Q96A05 226 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 AARSD1Q9BTE6 412 aaKnown RBP21.22■□□□□ 0.99
VPS28-205ENST00000526204 PRORSD1PA6NEY8 169 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 MUSKO15146 869 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 CA12O43570 354 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 TNFAIP8O95379 198 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 STAMBPO95630 424 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms