RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PHF12Q96QT6 1004 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 PRPF18Q99633 342 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 TRIM62Q9BVG3 475 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 SLC39A8Q9C0K1 460 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ZC4H2Q9NQZ6 224 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 CNTN6Q9UQ52 1028 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 PCDHB9Q9Y5E1 797 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 SPAARA0A1B0GVQ0 90 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 FAM149AA5PLN7 773 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 RCCD1A6NED2 376 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ZSCAN5BA6NJL1 495 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 RASSF9O75901 435 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 SEMA3DO95025 777 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ASMTLO95671 621 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ENO2P09104 434 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 TFPTP0C1Z6 253 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 CISD3P0C7P0 127 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 GBE1Q04446 702 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 ZNF252P-AS1Q0IIN9 211 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 SLC18A3Q16572 532 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 PLK5Q496M5 336 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 PRUNE1Q86TP1 453 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 RELL1Q8IUW5 271 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 OR8D1Q8WZ84 308 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 SPOCK2Q92563 424 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 SLC39A13Q96H72 371 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 CINPQ9BW66 212 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 PRM3Q9NNZ6 103 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 PARD6AQ9NPB6 346 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 C8orf4Q9NR00 106 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 MBD1Q9UIS9 605 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 FBXO10Q9UK96 956 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 SPEF1Q9Y4P9 236 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 SCINQ9Y6U3 715 aa7.94□□□□□ -1.14
LIMCH1-219ENST00000514096 LOC400499M0QZD8 3231 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 HOXC11O43248 304 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 SGTAO43765 313 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 SEMA4FO95754 770 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 KRT83P78385 493 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 C1QBPQ07021 282 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 SLC10A7Q0GE19 358 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 FOXC1Q12948 553 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 TRIP13Q15645 432 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 CCDC153Q494R4 210 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 CXorf57Q6NSI4 855 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 TMTC1Q8IUR5 882 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 ATPAF2Q8N5M1 289 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 ARFGAP1Q8N6T3 406 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 NPWQ8N729 165 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 DDHD1Q8NEL9 900 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 SLC6A18Q96N87 628 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 SLC2A13Q96QE2 648 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 AIPL1Q9NZN9 384 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 SIRPGQ9P1W8 387 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 PRKAB1Q9Y478 270 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 PCDHA13Q9Y5I0 950 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 TRIM64A6NGJ6 449 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 TRIM64BA6NI03 449 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 PMM2O15305 246 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 USP12O75317 370 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 SRCP12931 536 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 IFNA8P32881 189 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 PPP2CBP62714 309 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 PPP2CAP67775 309 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 PTPRNQ16849 979 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 RSPO4Q2I0M5 234 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 C4orf46Q504U0 113 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 METTL21CQ5VZV1 264 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 PSAPL1Q6NUJ1 521 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 BMP8AQ7Z5Y6 402 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 GOT1L1Q8NHS2 421 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 FIBINQ8TAL6 211 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 KRT35Q92764 455 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 BIRC7Q96CA5 298 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 KLHL29Q96CT2 875 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 PPCSQ9HAB8 311 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 SMARCAL1Q9NZC9 954 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 SELENONQ9NZV5 590 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 SEC16AO15027 2179 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 RP1P56715 2156 aa7.93□□□□□ -1.14
LIMCH1-219ENST00000514096 TMEM191CA6NGB0 347 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 WNT9AO14904 365 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 KHNYNO15037 678 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 INPP4BO15327 924 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 INMTO95050 263 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 TOP3BO95985 862 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 ALAS2P22557 587 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 PLA2G5P39877 138 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 RGRP47804 291 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 SCTRP47872 440 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 NOVA1P51513 510 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CDH4P55283 916 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 HSD17B7P56937 341 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 MRPS21P82921 87 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CCZ1BP86790 482 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 CCZ1P86791 482 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 TMPRSS15P98073 1019 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 OLIG2Q13516 323 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 NR1D2Q14995 579 aa7.92□□□□□ -1.14
LIMCH1-219ENST00000514096 KLHDC10Q6PID8 442 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms