RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.42□□□□□ -0.42
NUP88-201ENST00000225696 MARCH4Q9P2E8 410 aaPredicted RBP12.42□□□□□ -0.42
NUP88-201ENST00000225696 ABCD2Q9UBJ2 740 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 SH3BP1Q9Y3L3 701 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 KCTD3Q9Y597 815 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 V9GYQ6 96 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 OTOFQ9HC10 1997 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 TTC3P53804 2025 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 ASB14A6NK59 587 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 H3BMM5 538 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 PIP5K1BO14986 540 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 ARPC2O15144 300 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 STAMBPO95630 424 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 SNAP29O95721 258 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 SNAI1O95863 264 aaPredicted RBP12.42□□□□□ -0.42
NUP88-201ENST00000225696 KCNE1P15382 129 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 IMPDH1P20839 514 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 FUT4P22083 530 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 PNPLA4P41247 253 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 POLD2P49005 469 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 ESRRGP62508 458 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 ECT2LQ008S8 904 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 PPIL2Q13356 520 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 TGFBIQ15582 683 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 NEDD8Q15843 81 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 ATP6AP1Q15904 470 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 MAP7D1Q3KQU3 841 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 CYBRD1Q53TN4 286 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 RAB41Q5JT25 222 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 INTS11Q5TA45 600 aaKnown RBP12.42□□□□□ -0.42
NUP88-201ENST00000225696 KIAA0930Q6ICG6 404 aaPredicted RBP12.42□□□□□ -0.42
NUP88-201ENST00000225696 NANOGP8Q6NSW7 305 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 DCLRE1AQ6PJP8 1040 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 HACD2Q6Y1H2 254 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 TOP6BLQ8N6T0 577 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 OR13J1Q8NGT2 312 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 DNAJB3Q8WWF6 145 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 VPS33AQ96AX1 596 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 FAR2Q96K12 515 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 PIF1Q9H611 641 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 RBM22Q9NW64 420 aaKnown RBP eCLIP12.42□□□□□ -0.424e-7■■■■■ 29.9
NUP88-201ENST00000225696 NUDT5Q9UKK9 219 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 CDH7Q9ULB5 785 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 BTRCQ9Y297 605 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 CRYL1Q9Y2S2 319 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 IPPQ9Y573 584 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 J3QRK9 145 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 GIPC1O14908 333 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 CLOCKO15516 846 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 MSI1O43347 362 aaKnown RBP12.41□□□□□ -0.42
NUP88-201ENST00000225696 CDK14O94921 469 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 MMP3P08254 477 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 INHBBP09529 407 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 HSPA8P11142 646 aaKnown RBP12.41□□□□□ -0.42
NUP88-201ENST00000225696 CCNCP24863 283 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 ACADVLP49748 655 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 DIO3P55073 304 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 MAXP61244 160 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 PTPRCAPQ14761 206 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 XKR4Q5GH76 650 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 KCTD8Q6ZWB6 473 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 ERO1BQ86YB8 467 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 PHYKPLQ8IUZ5 450 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 RYBPQ8N488 228 aaPredicted RBP12.41□□□□□ -0.42
NUP88-201ENST00000225696 C3orf58Q8NDZ4 430 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 DNAJB14Q8TBM8 379 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 SGCDQ92629 289 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 ZUFSPQ96AP4 578 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 FBXL8Q96CD0 374 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 PAAF1Q9BRP4 392 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 ARMC7Q9H6L4 198 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 SLC52A3Q9NQ40 469 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 CNGB3Q9NQW8 809 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 MPP6Q9NZW5 540 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 CORINQ9Y5Q5 1042 aa12.41□□□□□ -0.42
NUP88-201ENST00000225696 INPP4BO15327 924 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 KPNA6O60684 536 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 GJB3O75712 270 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 ANXA9O76027 345 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 SLC4A1P02730 911 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 LINC00032P0C843 101 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 ZNF182P17025 639 aaPredicted RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 MATN1P21941 496 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 UGT1A1P22309 533 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 UGT1A4P22310 534 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 FASP25445 335 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 UGT1A3P35503 534 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 UGT1A5P35504 534 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 LEPRP48357 1165 aaKnown RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 WNT3AP56704 352 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 ATP6V0D1P61421 351 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 TIAL1Q01085 375 aaKnown RBP eCLIP12.4□□□□□ -0.42
NUP88-201ENST00000225696 CBX3Q13185 183 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 ACAP2Q15057 778 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 CROCCP3Q8IVE0 287 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 LRRC43Q8N309 656 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 SCAMP5Q8TAC9 235 aa12.4□□□□□ -0.42
NUP88-201ENST00000225696 MAGEE2Q8TD90 523 aaPredicted RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 DQX1Q8TE96 717 aaKnown RBP12.4□□□□□ -0.42
NUP88-201ENST00000225696 ROPN1LQ96C74 230 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms