RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 FUOMA2VDF0 154 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 CLDN25C9JDP6 229 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 PFDN6O15212 129 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 PORP16435 677 aaPredicted RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 PIGFQ07326 219 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 SLC10A6Q3KNW5 377 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 STXBP5Q5T5C0 1151 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 PRMT9Q6P2P2 845 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 ACVR1CQ8NER5 493 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 REPS2Q8NFH8 660 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 C19orf60Q96EN9 201 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 EPB41L1Q9H4G0 881 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 CNTN6Q9UQ52 1028 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 MAFBQ9Y5Q3 323 aaPredicted RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 TRPM3Q9HCF6 1732 aaPredicted RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 NAV1Q8NEY1 1877 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 LOC100506127A0A0U1RQW1 187 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 NCAM2O15394 837 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 CD1EP15812 388 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 ADSLP30566 484 aaPredicted RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 CHRNA4P43681 627 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 PITX1P78337 314 aaPredicted RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 NRG1Q02297 640 aaPredicted RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 LIPEQ05469 1076 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 PPIL2Q13356 520 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 PMS2P3Q13401 168 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 DGUOKQ16854 277 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 CPNE9Q8IYJ1 553 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 BBS5Q8N3I7 341 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 FBXO39Q8N4B4 442 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 GLT1D1Q96MS3 346 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 NAA50Q9GZZ1 169 aaKnown RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 ASB14A6NK59 587 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 C9IYK1 514 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 FARP2O94887 1054 aaPredicted RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 DBTP11182 482 aaKnown RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 CYP2C9P11712 490 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 CAPGP40121 348 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 GJA9P57773 515 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 TNK2Q07912 1038 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 ZNF846Q147U1 533 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 DUS1LQ6P1R4 473 aaKnown RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 CNSTQ6PJW8 725 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 SLC26A9Q7LBE3 791 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 ESAMQ96AP7 390 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 BBS2Q9BXC9 721 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 HPS4Q9NQG7 708 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 RIC8BQ9NVN3 520 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 TUBGCP4Q9UGJ1 667 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 UBQLN1Q9UMX0 589 aaKnown RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 STYXL1Q9Y6J8 313 aa11.08□□□□□ -0.64
CLN3-244ENST00000636147 MYH14Q7Z406 1995 aaKnown RBP11.08□□□□□ -0.64
CLN3-244ENST00000636147 C19orf81C9J6K1 198 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 PPEF2O14830 753 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 SIX3O95343 332 aaPredicted RBP11.07□□□□□ -0.64
CLN3-244ENST00000636147 SNAP29O95721 258 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 IL4RP24394 825 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 LMO2P25791 158 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ADRA1BP35368 520 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 UBE3AQ05086 875 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ZNF235Q14590 738 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 CCDC85BQ15834 202 aaPredicted RBP11.07□□□□□ -0.64
CLN3-244ENST00000636147 INAQ16352 499 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 KYAT1Q16773 422 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 RABL3Q5HYI8 236 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 CENPLQ8N0S6 344 aaPredicted RBP11.07□□□□□ -0.64
CLN3-244ENST00000636147 CLYBLQ8N0X4 340 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 OR8H2Q8N162 312 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 CHST13Q8NET6 341 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 CHID1Q9BWS9 393 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ASPSCR1Q9BZE9 553 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 MARCH7Q9H992 704 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 COMMD8Q9NX08 183 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 SUCOQ9UBS9 1254 aaKnown RBP11.07□□□□□ -0.64
CLN3-244ENST00000636147 ZNF232Q9UNY5 417 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 SDHDO14521 159 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 AZIN1O14977 448 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 B4GAT1O43505 415 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 NOBOXO60393 691 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ATE1O95260 518 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 PIGRP01833 764 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 GSNP06396 782 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 IL7RP16871 459 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ELK4P28324 431 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 TUBA4AP68366 448 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 SLC25A52Q3SY17 297 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 TTC23Q5W5X9 447 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 TRAF7Q6Q0C0 670 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 SH2D5Q6ZV89 423 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 POLE4Q9NR33 117 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 NDFIP2Q9NV92 336 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 VPS51Q9UID3 782 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 ZNF510Q9Y2H8 683 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 RNF11Q9Y3C5 154 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 G3V2L1 256 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 CLASP2O75122 1294 aaKnown RBP11.07□□□□□ -0.64
CLN3-244ENST00000636147 RGS20O76081 388 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 CD4P01730 458 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 BMXP51813 675 aa11.07□□□□□ -0.64
CLN3-244ENST00000636147 SIM2Q14190 667 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms