RNA–Protein interactions for RNA: ENST00000479602.5

DDX56-211, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 440 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-211ENST00000479602 ZNF641Q96N77 438 aaPredicted RBP9.01□□□□□ -0.97
DDX56-211ENST00000479602 HERPUD2Q9BSE4 406 aa9.01□□□□□ -0.97
DDX56-211ENST00000479602 POLR1EQ9GZS1 481 aaKnown RBP9.01□□□□□ -0.97
DDX56-211ENST00000479602 MIR1-1HGQ9H1L0 117 aa9.01□□□□□ -0.97
DDX56-211ENST00000479602 PABPC3Q9H361 631 aaKnown RBP9.01□□□□□ -0.97
DDX56-211ENST00000479602 SP110Q9HB58 689 aa9.01□□□□□ -0.97
DDX56-211ENST00000479602 KLHL11Q9NVR0 708 aa9.01□□□□□ -0.97
DDX56-211ENST00000479602 TRMT1Q9NXH9 659 aaKnown RBP9.01□□□□□ -0.97
DDX56-211ENST00000479602 LHX3Q9UBR4 397 aa9.01□□□□□ -0.97
DDX56-211ENST00000479602 SERGEFQ9UGK8 458 aa9.01□□□□□ -0.97
DDX56-211ENST00000479602 SLCO3A1Q9UIG8 710 aa9.01□□□□□ -0.97
DDX56-211ENST00000479602 PPM1HQ9ULR3 514 aa9.01□□□□□ -0.97
DDX56-211ENST00000479602 PACSIN2Q9UNF0 486 aaPredicted RBP9.01□□□□□ -0.97
DDX56-211ENST00000479602 APOBEC2Q9Y235 224 aaKnown RBP9.01□□□□□ -0.97
DDX56-211ENST00000479602 PCDHB9Q9Y5E1 797 aa9.01□□□□□ -0.97
DDX56-211ENST00000479602 SAR1BQ9Y6B6 198 aa9.01□□□□□ -0.97
DDX56-211ENST00000479602 A0A1B0GTQ1 180 aa9□□□□□ -0.97
DDX56-211ENST00000479602 C5orf60A6NFR6 353 aa9□□□□□ -0.97
DDX56-211ENST00000479602 ERI2A8K979 691 aaKnown RBP9□□□□□ -0.97
DDX56-211ENST00000479602 CBX4O00257 560 aa9□□□□□ -0.97
DDX56-211ENST00000479602 WNT9AO14904 365 aa9□□□□□ -0.97
DDX56-211ENST00000479602 HTRA2O43464 458 aaPredicted RBP9□□□□□ -0.97
DDX56-211ENST00000479602 TNFSF14O43557 240 aa9□□□□□ -0.97
DDX56-211ENST00000479602 LATO43561 262 aa9□□□□□ -0.97
DDX56-211ENST00000479602 AP1G1O43747 822 aa9□□□□□ -0.97
DDX56-211ENST00000479602 LIASO43766 372 aa9□□□□□ -0.97
DDX56-211ENST00000479602 DFNA5O60443 496 aa9□□□□□ -0.97
DDX56-211ENST00000479602 SNAP91O60641 907 aa9□□□□□ -0.97
DDX56-211ENST00000479602 SIN3BO75182 1162 aa9□□□□□ -0.97
DDX56-211ENST00000479602 GCATO75600 419 aa9□□□□□ -0.97
DDX56-211ENST00000479602 POP4O95707 220 aaKnown RBP9□□□□□ -0.97
DDX56-211ENST00000479602 IGSF6O95976 241 aa9□□□□□ -0.97
DDX56-211ENST00000479602 EPOP01588 193 aa9□□□□□ -0.97
DDX56-211ENST00000479602 KRT10P13645 584 aa9□□□□□ -0.97
DDX56-211ENST00000479602 CCNB1P14635 433 aa9□□□□□ -0.97
DDX56-211ENST00000479602 PECAM1P16284 738 aaPredicted RBP9□□□□□ -0.97
DDX56-211ENST00000479602 ITGB7P26010 798 aa9□□□□□ -0.97
DDX56-211ENST00000479602 GJC1P36383 396 aa9□□□□□ -0.97
DDX56-211ENST00000479602 NUDT1P36639 197 aa9□□□□□ -0.97
DDX56-211ENST00000479602 OTUD4Q01804 1114 aaKnown RBP9□□□□□ -0.97
DDX56-211ENST00000479602 CCDC15Q0P6D6 951 aa9□□□□□ -0.97
DDX56-211ENST00000479602 CBLBQ13191 982 aa9□□□□□ -0.97
DDX56-211ENST00000479602 SUZ12Q15022 739 aaKnown RBP9□□□□□ -0.97
DDX56-211ENST00000479602 DLG2Q15700 870 aa9□□□□□ -0.97
DDX56-211ENST00000479602 P3H1Q32P28 736 aa9□□□□□ -0.97
DDX56-211ENST00000479602 SOWAHCQ53LP3 525 aaPredicted RBP9□□□□□ -0.97
DDX56-211ENST00000479602 TEX44Q53QW1 395 aa9□□□□□ -0.97
DDX56-211ENST00000479602 ZFYVE27Q5T4F4 411 aa9□□□□□ -0.97
DDX56-211ENST00000479602 MARC1Q5VT66 337 aa9□□□□□ -0.97
DDX56-211ENST00000479602 FAM46CQ5VWP2 391 aa9□□□□□ -0.97
DDX56-211ENST00000479602 KIAA0895LQ68EN5 471 aa9□□□□□ -0.97
DDX56-211ENST00000479602 KANSL1Q7Z3B3 1105 aa9□□□□□ -0.97
DDX56-211ENST00000479602 FAM124AQ86V42 546 aa9□□□□□ -0.97
DDX56-211ENST00000479602 CREG2Q8IUH2 290 aa9□□□□□ -0.97
DDX56-211ENST00000479602 RHBDD1Q8TEB9 315 aa9□□□□□ -0.97
DDX56-211ENST00000479602 SAP25Q8TEE9 199 aa9□□□□□ -0.97
DDX56-211ENST00000479602 HTR3CQ8WXA8 447 aa9□□□□□ -0.97
DDX56-211ENST00000479602 OR8D1Q8WZ84 308 aa9□□□□□ -0.97
DDX56-211ENST00000479602 RAB7BQ96AH8 199 aa9□□□□□ -0.97
DDX56-211ENST00000479602 NUDCD1Q96RS6 583 aa9□□□□□ -0.97
DDX56-211ENST00000479602 HDAC8Q9BY41 377 aa9□□□□□ -0.97
DDX56-211ENST00000479602 NEUROG2Q9H2A3 272 aa9□□□□□ -0.97
DDX56-211ENST00000479602 USP29Q9HBJ7 922 aa9□□□□□ -0.97
DDX56-211ENST00000479602 SCUBE2Q9NQ36 999 aa9□□□□□ -0.97
DDX56-211ENST00000479602 FEZ2Q9UHY8 353 aaPredicted RBP9□□□□□ -0.97
DDX56-211ENST00000479602 LHX6Q9UPM6 363 aa9□□□□□ -0.97
DDX56-211ENST00000479602 PPIL1Q9Y3C6 166 aa9□□□□□ -0.97
DDX56-211ENST00000479602 FARP1Q9Y4F1 1045 aaPredicted RBP9□□□□□ -0.97
DDX56-211ENST00000479602 WASF2Q9Y6W5 498 aa9□□□□□ -0.97
DDX56-211ENST00000479602 PTPRBP23467 1997 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.99□□□□□ -0.97
DDX56-211ENST00000479602 A0A087WV48 116 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 TRABD2BA6NFA1 517 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 TTC34A8MYJ7 566 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 C1QTNF3-AMACRE9PGA6 284 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 J3KR12 359 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 TRAFD1O14545 582 aaPredicted RBP8.99□□□□□ -0.97
DDX56-211ENST00000479602 MT-CO1P00395 513 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 FGGP02679 453 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 DNTTP04053 509 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 RBP3P10745 1247 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 C5AR1P21730 350 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 GLDCP23378 1020 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 CTSOP43234 321 aaPredicted RBP8.99□□□□□ -0.97
DDX56-211ENST00000479602 GRK6P43250 576 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 MAGEA6P43360 314 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 MMP13P45452 471 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 RXRGP48443 463 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 CCR5P51681 352 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 RAD51Q06609 339 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 SLC10A7Q0GE19 358 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 WASHC5Q12768 1159 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 COL9A2Q14055 689 aaPredicted RBP8.99□□□□□ -0.97
DDX56-211ENST00000479602 CYTH1Q15438 398 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 FNDC3BQ53EP0 1204 aaKnown RBP8.99□□□□□ -0.97
DDX56-211ENST00000479602 CARD16Q5EG05 197 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 ZNF776Q68DI1 518 aaPredicted RBP8.99□□□□□ -0.97
DDX56-211ENST00000479602 NEK5Q6P3R8 708 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 BRAT1Q6PJG6 821 aa8.99□□□□□ -0.97
DDX56-211ENST00000479602 SYDE1Q6ZW31 735 aaPredicted RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms