RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeastyeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SOF1YLL011W Q0182Q9ZZW1 134 aa5.42□□□□□ -1.54
SOF1YLL011W CDC11P32458 415 aa5.41□□□□□ -1.54
SOF1YLL011W ABD1P32783 436 aaPredicted RBP5.41□□□□□ -1.54
SOF1YLL011W PFD1P46988 109 aa5.41□□□□□ -1.54
SOF1YLL011W RTA1P53047 317 aa5.41□□□□□ -1.54
SOF1YLL011W ERP6P53198 216 aa5.41□□□□□ -1.54
SOF1YLL011W BRE1Q07457 700 aaKnown RBP5.41□□□□□ -1.54
SOF1YLL011W TMA46Q12000 345 aaKnown RBP5.41□□□□□ -1.54
SOF1YLL011W NKP1Q12493 238 aa5.41□□□□□ -1.54
SOF1YLL011W SRF1Q12516 437 aa5.41□□□□□ -1.54
SOF1YLL011W SEC61P32915 480 aa5.4□□□□□ -1.54
SOF1YLL011W SUM1P46676 1062 aa5.4□□□□□ -1.54
SOF1YLL011W DAS1P47005 663 aa5.4□□□□□ -1.54
SOF1YLL011W TY4A-JP47023 414 aa5.4□□□□□ -1.54
SOF1YLL011W ARH1P48360 493 aa5.4□□□□□ -1.54
SOF1YLL011W BNI4P53858 892 aa5.4□□□□□ -1.54
SOF1YLL011W YNL165WP53891 406 aa5.4□□□□□ -1.54
SOF1YLL011W KRE33P53914 1056 aaKnown RBP5.4□□□□□ -1.54
SOF1YLL011W SND1Q04007 877 aa5.4□□□□□ -1.54
SOF1YLL011W VMS1Q04311 632 aaKnown RBP5.4□□□□□ -1.54
SOF1YLL011W BPT1P14772 1559 aa5.4□□□□□ -1.54
SOF1YLL011W NUP145P49687 1317 aa5.4□□□□□ -1.55
SOF1YLL011W SBP1P10080 294 aaKnown RBP5.39□□□□□ -1.55
SOF1YLL011W AGP1P25376 633 aa5.39□□□□□ -1.55
SOF1YLL011W MRP8P35719 219 aa5.39□□□□□ -1.55
SOF1YLL011W VBA5P36172 582 aa5.39□□□□□ -1.55
SOF1YLL011W SEA4P38164 1038 aa5.39□□□□□ -1.55
SOF1YLL011W IRR1P40541 1150 aa5.39□□□□□ -1.55
SOF1YLL011W HUL4P40985 892 aa5.39□□□□□ -1.55
SOF1YLL011W KIP3P53086 805 aaKnown RBP5.39□□□□□ -1.55
SOF1YLL011W ALO1P54783 526 aaKnown RBP5.39□□□□□ -1.55
SOF1YLL011W SVL3Q03088 825 aaKnown RBP5.39□□□□□ -1.55
SOF1YLL011W TAF8Q03750 510 aa5.39□□□□□ -1.55
SOF1YLL011W DFG5Q05031 458 aa5.39□□□□□ -1.55
SOF1YLL011W YDL129WQ07555 291 aa5.39□□□□□ -1.55
SOF1YLL011W NYV1Q12255 253 aa5.39□□□□□ -1.55
SOF1YLL011W TMA7Q3E764 64 aaKnown RBP5.39□□□□□ -1.55
SOF1YLL011W ATG2P53855 1592 aa5.39□□□□□ -1.55
SOF1YLL011W TRP2P00899 507 aaKnown RBP5.39□□□□□ -1.55
SOF1YLL011W STE6P12866 1290 aa5.39□□□□□ -1.55
SOF1YLL011W MLF3P32047 452 aa5.39□□□□□ -1.55
SOF1YLL011W MPE1P35728 441 aaKnown RBP5.39□□□□□ -1.55
SOF1YLL011W SNF7P39929 240 aaKnown RBP5.39□□□□□ -1.55
SOF1YLL011W GNP1P48813 663 aa5.39□□□□□ -1.55
SOF1YLL011W CTR9P89105 1077 aa5.39□□□□□ -1.55
SOF1YLL011W ATG16Q03818 150 aa5.39□□□□□ -1.55
SOF1YLL011W SHE9Q04172 456 aa5.39□□□□□ -1.55
SOF1YLL011W PUS5Q06244 254 aa5.39□□□□□ -1.55
SOF1YLL011W UTP4Q06679 776 aaKnown RBP5.39□□□□□ -1.55
SOF1YLL011W COBP00163 385 aa5.38□□□□□ -1.55
SOF1YLL011W RPP2BP02400 110 aaKnown RBP5.38□□□□□ -1.55
SOF1YLL011W DPB3P27344 201 aa5.38□□□□□ -1.55
SOF1YLL011W SBA1P28707 216 aaKnown RBP5.38□□□□□ -1.55
SOF1YLL011W PEX6P33760 1030 aa5.38□□□□□ -1.55
SOF1YLL011W SQT1P35184 431 aa5.38□□□□□ -1.55
SOF1YLL011W BET3P36149 193 aa5.38□□□□□ -1.55
SOF1YLL011W ECM2P38241 364 aaKnown RBP5.38□□□□□ -1.55
SOF1YLL011W BSD2P38356 321 aa5.38□□□□□ -1.55
SOF1YLL011W RSM26P47141 266 aa5.38□□□□□ -1.55
SOF1YLL011W PMT3P47190 753 aa5.38□□□□□ -1.55
SOF1YLL011W HSV2P50079 448 aaPredicted RBP5.38□□□□□ -1.55
SOF1YLL011W NUT1P53114 1132 aa5.38□□□□□ -1.55
SOF1YLL011W UGO1Q03327 502 aa5.38□□□□□ -1.55
SOF1YLL011W COG4Q06096 861 aa5.38□□□□□ -1.55
SOF1YLL011W YEF3P16521 1044 aaKnown RBP5.37□□□□□ -1.55
SOF1YLL011W HIR1P32479 840 aa5.37□□□□□ -1.55
SOF1YLL011W SYH1Q02875 849 aaKnown RBP5.37□□□□□ -1.55
SOF1YLL011W YLR225CQ05948 407 aaKnown RBP5.37□□□□□ -1.55
SOF1YLL011W THI73Q07904 523 aa5.37□□□□□ -1.55
SOF1YLL011W REC8Q12188 680 aa5.37□□□□□ -1.55
SOF1YLL011W PUF4P25339 888 aaKnown RBP RIP-Chip data5.36□□□□□ -1.55not detected
SOF1YLL011W DUR3P33413 735 aa5.36□□□□□ -1.55
SOF1YLL011W PBY1P38254 753 aa5.36□□□□□ -1.55
SOF1YLL011W PTC2P39966 464 aaKnown RBP5.36□□□□□ -1.55
SOF1YLL011W KRI1P42846 591 aaKnown RBP5.36□□□□□ -1.55
SOF1YLL011W ALR2P43553 858 aa5.36□□□□□ -1.55
SOF1YLL011W UME1Q03010 460 aa5.36□□□□□ -1.55
SOF1YLL011W ATP4P05626 244 aa5.35□□□□□ -1.55
SOF1YLL011W LYP1P32487 611 aa5.35□□□□□ -1.55
SOF1YLL011W ISW1P38144 1129 aa5.35□□□□□ -1.55
SOF1YLL011W GEM1P39722 662 aa5.35□□□□□ -1.55
SOF1YLL011W NOC2P39744 710 aaKnown RBP5.35□□□□□ -1.55
SOF1YLL011W DLD3P39976 496 aaKnown RBP5.35□□□□□ -1.55
SOF1YLL011W MAL11P53048 616 aa5.35□□□□□ -1.55
SOF1YLL011W YGR021WP53212 290 aa5.35□□□□□ -1.55
SOF1YLL011W UTP8P53276 713 aaKnown RBP5.35□□□□□ -1.55
SOF1YLL011W MTC5Q03897 1148 aa5.35□□□□□ -1.55
SOF1YLL011W HDA2Q06629 674 aa5.35□□□□□ -1.55
SOF1YLL011W YDL124WQ07551 312 aaKnown RBP5.35□□□□□ -1.55
SOF1YLL011W DPS1P04802 557 aaKnown RBP5.34□□□□□ -1.55
SOF1YLL011W PIF1P07271 859 aa5.34□□□□□ -1.55
SOF1YLL011W NAB2P32505 525 aaKnown RBP RIP-Chip data5.34□□□□□ -1.55 RIP-Chip
SOF1YLL011W MOT2P34909 587 aaKnown RBP5.34□□□□□ -1.55
SOF1YLL011W RER2P35196 286 aa5.34□□□□□ -1.55
SOF1YLL011W GIP1P38229 639 aa5.34□□□□□ -1.55
SOF1YLL011W PEX28P38848 579 aa5.34□□□□□ -1.55
SOF1YLL011W AIM46P38885 310 aa5.34□□□□□ -1.55
SOF1YLL011W GDH3P39708 457 aa5.34□□□□□ -1.55
SOF1YLL011W RVS167P39743 482 aaKnown RBP5.34□□□□□ -1.55
SOF1YLL011W VPS27P40343 622 aaKnown RBP5.34□□□□□ -1.55
Retrieved 100 of 5,963 RNA–protein pairs in 32.5 ms