RNA–Protein interactions for RNA: YIL144W

NDC80, Transcript of Component of the kinetochore-associated Ndc80 complex, yeast

Gene NDC80, Length 2,076 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NDC80	YIL144W	HXT17	P53631	564 aa		4.56	□□□□□ -1.68
NDC80	YIL144W	HXT15	P54854	567 aa		4.56	□□□□□ -1.68
NDC80	YIL144W	EEB1	Q02891	456 aa		4.56	□□□□□ -1.68
NDC80	YIL144W	GDE1	Q02979	1223 aa		4.56	□□□□□ -1.68
NDC80	YIL144W	YDR461C-A	Q2V2P7	80 aa		4.56	□□□□□ -1.68
NDC80	YIL144W	FPS1	P23900	669 aa		4.55	□□□□□ -1.68
NDC80	YIL144W	MSH3	P25336	1018 aa		4.55	□□□□□ -1.68
NDC80	YIL144W	RDH54	P38086	958 aa		4.55	□□□□□ -1.68
NDC80	YIL144W	EXO5	P38289	585 aa		4.55	□□□□□ -1.68
NDC80	YIL144W	PEX28	P38848	579 aa		4.55	□□□□□ -1.68
NDC80	YIL144W	CCT8	P47079	568 aa	Known RBP	4.55	□□□□□ -1.68
NDC80	YIL144W	LYS5	P50113	272 aa		4.55	□□□□□ -1.68
NDC80	YIL144W	HDA2	Q06629	674 aa		4.55	□□□□□ -1.68
NDC80	YIL144W	LSB6	P42951	607 aa		4.55	□□□□□ -1.68
NDC80	YIL144W	PEX13	P80667	386 aa		4.55	□□□□□ -1.68
NDC80	YIL144W	SOG2	Q08817	791 aa		4.55	□□□□□ -1.68
NDC80	YIL144W	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.54	□□□□□ -1.68
NDC80	YIL144W	TY1A-DR6	P0CX70	440 aa		4.54	□□□□□ -1.68
NDC80	YIL144W	TY1A-ER1	P0CX71	440 aa		4.54	□□□□□ -1.68
NDC80	YIL144W	TY1A-LR2	P0CX72	440 aa		4.54	□□□□□ -1.68
NDC80	YIL144W	TY1A-PL	P0CX73	440 aa		4.54	□□□□□ -1.68
NDC80	YIL144W	TY1A-JR1	P0CX74	440 aa		4.54	□□□□□ -1.68
NDC80	YIL144W	TY1A-LR3	P0CX75	440 aa		4.54	□□□□□ -1.68
NDC80	YIL144W	TY1A-ML2	P0CX76	440 aa		4.54	□□□□□ -1.68
NDC80	YIL144W	PRI2	P20457	528 aa		4.54	□□□□□ -1.68
NDC80	YIL144W	RSC2	Q06488	889 aa		4.54	□□□□□ -1.68
NDC80	YIL144W	TY1A-GR1	Q12085	440 aa		4.54	□□□□□ -1.68
NDC80	YIL144W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.54	□□□□□ -1.68
NDC80	YIL144W	TY1A-OL	Q92392	440 aa	Known RBP	4.54	□□□□□ -1.68
NDC80	YIL144W	HTS1	P07263	546 aa	Known RBP	4.53	□□□□□ -1.68
NDC80	YIL144W	SEC23	P15303	768 aa	Known RBP	4.53	□□□□□ -1.68
NDC80	YIL144W	GRX1	P25373	110 aa	Known RBP	4.53	□□□□□ -1.68
NDC80	YIL144W	RSM26	P47141	266 aa		4.53	□□□□□ -1.68
NDC80	YIL144W	CWC24	P53769	259 aa		4.53	□□□□□ -1.68
NDC80	YIL144W	RTT10	Q08924	1013 aa		4.53	□□□□□ -1.68
NDC80	YIL144W	RPP1A	P05318	106 aa	Predicted RBP	4.53	□□□□□ -1.68
NDC80	YIL144W	NSG2	P53898	299 aa		4.53	□□□□□ -1.68
NDC80	YIL144W	MRL1	Q06815	381 aa		4.53	□□□□□ -1.68
NDC80	YIL144W	OPI10	Q08202	246 aa		4.53	□□□□□ -1.68
NDC80	YIL144W	WRS1	Q12109	432 aa	Known RBP	4.53	□□□□□ -1.68
NDC80	YIL144W	SQT1	P35184	431 aa		4.52	□□□□□ -1.69
NDC80	YIL144W	HAS1	Q03532	505 aa	Known RBP	4.52	□□□□□ -1.69
NDC80	YIL144W	ESC2	Q06340	456 aa		4.51	□□□□□ -1.69
NDC80	YIL144W	RER2	P35196	286 aa		4.5	□□□□□ -1.69
NDC80	YIL144W	CEM1	P39525	442 aa		4.5	□□□□□ -1.69
NDC80	YIL144W	SPF1	P39986	1215 aa	Known RBP	4.5	□□□□□ -1.69
NDC80	YIL144W	BUD6	P41697	788 aa		4.5	□□□□□ -1.69
NDC80	YIL144W	NSE3	Q05541	303 aa		4.5	□□□□□ -1.69
NDC80	YIL144W	TOP1	P04786	769 aa		4.5	□□□□□ -1.69
NDC80	YIL144W	NAR1	P23503	491 aa	Known RBP	4.5	□□□□□ -1.69
NDC80	YIL144W	STE5	P32917	917 aa		4.5	□□□□□ -1.69
NDC80	YIL144W	NEM1	P38757	446 aa		4.5	□□□□□ -1.69
NDC80	YIL144W	FET4	P40988	552 aa		4.5	□□□□□ -1.69
NDC80	YIL144W	SLS1	P42900	643 aa		4.5	□□□□□ -1.69
NDC80	YIL144W	SOK2	P53438	785 aa	Predicted RBP	4.5	□□□□□ -1.69
NDC80	YIL144W	ROD1	Q02805	837 aa		4.5	□□□□□ -1.69
NDC80	YIL144W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.5	□□□□□ -1.69	not detected
NDC80	YIL144W	BDF2	Q07442	638 aa		4.5	□□□□□ -1.69
NDC80	YIL144W	CIT2	P08679	460 aa		4.49	□□□□□ -1.69
NDC80	YIL144W	PDC5	P16467	563 aa	Known RBP	4.49	□□□□□ -1.69
NDC80	YIL144W	SEA4	P38164	1038 aa		4.49	□□□□□ -1.69
NDC80	YIL144W	SIW14	P53965	281 aa		4.49	□□□□□ -1.69
NDC80	YIL144W	YIG1	Q08956	461 aa		4.49	□□□□□ -1.69
NDC80	YIL144W	TRP2	P00899	507 aa	Known RBP	4.49	□□□□□ -1.69
NDC80	YIL144W	GPM1	P00950	247 aa	Known RBP	4.49	□□□□□ -1.69
NDC80	YIL144W	VMA4	P22203	233 aa	Known RBP	4.49	□□□□□ -1.69
NDC80	YIL144W	GUP1	P53154	560 aa		4.49	□□□□□ -1.69
NDC80	YIL144W	UTP5	Q04177	643 aa	Known RBP	4.49	□□□□□ -1.69
NDC80	YIL144W	SBP1	P10080	294 aa	Known RBP	4.48	□□□□□ -1.69
NDC80	YIL144W	SRP40	P32583	406 aa	Predicted RBP	4.48	□□□□□ -1.69
NDC80	YIL144W	YHR020W	P38708	688 aa	Known RBP	4.48	□□□□□ -1.69
NDC80	YIL144W	HUL5	P53119	910 aa		4.48	□□□□□ -1.69
NDC80	YIL144W	TYW3	P53177	273 aa		4.48	□□□□□ -1.69
NDC80	YIL144W	RPN4	Q03465	531 aa		4.48	□□□□□ -1.69
NDC80	YIL144W	GIS4	Q04233	774 aa		4.48	□□□□□ -1.69
NDC80	YIL144W	MKK2	P32491	506 aa		4.47	□□□□□ -1.69
NDC80	YIL144W	PAN5	P38787	379 aa		4.47	□□□□□ -1.69
NDC80	YIL144W	POL5	P39985	1022 aa	Known RBP	4.47	□□□□□ -1.69
NDC80	YIL144W	GIP2	P40036	548 aa		4.47	□□□□□ -1.69
NDC80	YIL144W	NEO1	P40527	1151 aa		4.47	□□□□□ -1.69
NDC80	YIL144W	FPR4	Q06205	392 aa	Predicted RBP	4.47	□□□□□ -1.69
NDC80	YIL144W	BAS1	P22035	811 aa		4.47	□□□□□ -1.69
NDC80	YIL144W	KNS1	P32350	737 aa	Predicted RBP	4.47	□□□□□ -1.69
NDC80	YIL144W	ABD1	P32783	436 aa	Predicted RBP	4.47	□□□□□ -1.69
NDC80	YIL144W	AFG2	P32794	780 aa		4.47	□□□□□ -1.69
NDC80	YIL144W	YJL049W	P47048	450 aa		4.47	□□□□□ -1.69
NDC80	YIL144W	JJJ3	P47138	172 aa		4.47	□□□□□ -1.69
NDC80	YIL144W	UTP22	P53254	1237 aa	Predicted RBP	4.47	□□□□□ -1.69
NDC80	YIL144W	RAT1	Q02792	1006 aa	Known RBP	4.47	□□□□□ -1.69
NDC80	YIL144W	TDA5	Q06417	326 aa	Known RBP	4.47	□□□□□ -1.69
NDC80	YIL144W	PPM2	Q08282	695 aa		4.47	□□□□□ -1.69
NDC80	YIL144W	TMA46	Q12000	345 aa	Known RBP	4.47	□□□□□ -1.69
NDC80	YIL144W	FAL1	Q12099	399 aa	Known RBP	4.47	□□□□□ -1.69
NDC80	YIL144W	TAF13	P11747	167 aa		4.46	□□□□□ -1.7
NDC80	YIL144W	RAD4	P14736	754 aa		4.46	□□□□□ -1.7
NDC80	YIL144W	YKL091C	P33324	310 aa	Known RBP	4.46	□□□□□ -1.7
NDC80	YIL144W	TED1	P40533	473 aa		4.46	□□□□□ -1.7
NDC80	YIL144W	RNH70	P53331	553 aa		4.46	□□□□□ -1.7
NDC80	YIL144W	YLR225C	Q05948	407 aa	Known RBP	4.46	□□□□□ -1.7
NDC80	YIL144W	THI72	Q08579	599 aa		4.46	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 35.4 ms