RNA–Protein interactions for RNA: YDR407C

TRS120, Transcript of Component of transport protein particle (TRAPP) complex II, yeast

Gene TRS120, Length 3,870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRS120	YDR407C	RFC5	P38251	354 aa		4.1	□□□□□ -1.75
TRS120	YDR407C	SDS3	P40505	327 aa		4.1	□□□□□ -1.75
TRS120	YDR407C	SYF1	Q04048	859 aa	Predicted RBP	4.1	□□□□□ -1.75
TRS120	YDR407C	VID28	P40547	921 aa		4.1	□□□□□ -1.75
TRS120	YDR407C	PTK2	P47116	818 aa	Known RBP	4.1	□□□□□ -1.75
TRS120	YDR407C	YOR296W	Q08748	1289 aa		4.1	□□□□□ -1.75
TRS120	YDR407C	PYC1	P11154	1178 aa	Known RBP	4.1	□□□□□ -1.75
TRS120	YDR407C	ISY1	P21374	235 aa	Predicted RBP	4.1	□□□□□ -1.75
TRS120	YDR407C	TFG2	P41896	400 aa	Predicted RBP	4.1	□□□□□ -1.75
TRS120	YDR407C	FIG4	P42837	879 aa		4.1	□□□□□ -1.75
TRS120	YDR407C	NSG2	P53898	299 aa		4.1	□□□□□ -1.75
TRS120	YDR407C	MLH2	Q07980	695 aa		4.1	□□□□□ -1.75
TRS120	YDR407C	MCX1	P38323	520 aa	Predicted RBP	4.09	□□□□□ -1.75
TRS120	YDR407C	RPN10	P38886	268 aa	Known RBP	4.09	□□□□□ -1.75
TRS120	YDR407C	STM1	P39015	273 aa	Known RBP	4.09	□□□□□ -1.75
TRS120	YDR407C	HUL4	P40985	892 aa		4.09	□□□□□ -1.75
TRS120	YDR407C	ROG3	P43602	733 aa		4.09	□□□□□ -1.75
TRS120	YDR407C	ATG13	Q06628	738 aa		4.09	□□□□□ -1.75
TRS120	YDR407C	EST1	P17214	699 aa	Predicted RBP	4.09	□□□□□ -1.75
TRS120	YDR407C	UBC1	P21734	215 aa	Known RBP	4.09	□□□□□ -1.75
TRS120	YDR407C	RRM3	P38766	723 aa		4.09	□□□□□ -1.75
TRS120	YDR407C	PUS2	P53167	370 aa		4.09	□□□□□ -1.75
TRS120	YDR407C	EST2	Q06163	884 aa		4.09	□□□□□ -1.75
TRS120	YDR407C	DIB1	Q06819	143 aa	Predicted RBP	4.09	□□□□□ -1.75
TRS120	YDR407C	MNR2	P35724	969 aa		4.09	□□□□□ -1.76
TRS120	YDR407C	SET3	P36124	751 aa		4.09	□□□□□ -1.76
TRS120	YDR407C	AKR1	P39010	764 aa		4.09	□□□□□ -1.76
TRS120	YDR407C	CAF130	P53280	1122 aa	Predicted RBP	4.09	□□□□□ -1.76
TRS120	YDR407C	MMR1	Q06324	491 aa		4.09	□□□□□ -1.76
TRS120	YDR407C	ANP1	P32629	500 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	CSM2	P40465	213 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	CEX1	Q12453	761 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	MGM1	P32266	881 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	VFA1	P40080	203 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	YGR237C	P50089	785 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	TAD1	P53065	400 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	RAD61	Q99359	647 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	MIP1	P15801	1254 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	MAK31	P23059	88 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	RAD57	P25301	460 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	IRC8	P47046	822 aa		4.08	□□□□□ -1.76
TRS120	YDR407C	RAT1	Q02792	1006 aa	Known RBP	4.08	□□□□□ -1.76
TRS120	YDR407C	SIT4	P20604	311 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	PCH2	P38126	564 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	MIP6	P38760	659 aa	Known RBP	4.07	□□□□□ -1.76
TRS120	YDR407C	RTS1	P38903	757 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	PES4	P39684	611 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	TPM2	P40414	161 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	BTN2	P53286	410 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	NUR1	Q12066	484 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	CKA2	P19454	339 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	PRO3	P32263	286 aa	Known RBP	4.07	□□□□□ -1.76
TRS120	YDR407C	ADE17	P38009	592 aa	Known RBP	4.07	□□□□□ -1.76
TRS120	YDR407C	MED8	P38304	223 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	CCT3	P39077	534 aa	Known RBP	4.07	□□□□□ -1.76
TRS120	YDR407C	YMR147W	P40218	223 aa	Known RBP	4.07	□□□□□ -1.76
TRS120	YDR407C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
TRS120	YDR407C	THI3	Q07471	609 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	YKL068W-A	Q3E826	78 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	MET6	P05694	767 aa	Known RBP	4.07	□□□□□ -1.76
TRS120	YDR407C	UTP7	P40055	554 aa	Known RBP	4.07	□□□□□ -1.76
TRS120	YDR407C	EPL1	P43572	832 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	VPS60	Q03390	229 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	VPS38	Q05919	439 aa		4.07	□□□□□ -1.76
TRS120	YDR407C	PPR1	P07272	904 aa	Predicted RBP	4.06	□□□□□ -1.76
TRS120	YDR407C	NIP1	P32497	812 aa	Known RBP	4.06	□□□□□ -1.76
TRS120	YDR407C	RPT6	Q01939	405 aa	Known RBP	4.06	□□□□□ -1.76
TRS120	YDR407C	WRS1	Q12109	432 aa	Known RBP	4.06	□□□□□ -1.76
TRS120	YDR407C	QCR6	P00127	147 aa		4.06	□□□□□ -1.76
TRS120	YDR407C	RCK2	P38623	610 aa		4.06	□□□□□ -1.76
TRS120	YDR407C	RPL22B	P56628	122 aa	Known RBP	4.06	□□□□□ -1.76
TRS120	YDR407C	MSB4	Q12317	492 aa		4.06	□□□□□ -1.76
TRS120	YDR407C	CKI1	P20485	582 aa		4.06	□□□□□ -1.76
TRS120	YDR407C	KRE2	P27809	442 aa		4.06	□□□□□ -1.76
TRS120	YDR407C	CAP1	P28495	268 aa	Known RBP	4.06	□□□□□ -1.76
TRS120	YDR407C	STT3	P39007	718 aa	Known RBP	4.06	□□□□□ -1.76
TRS120	YDR407C	GDE1	Q02979	1223 aa		4.06	□□□□□ -1.76
TRS120	YDR407C	IRC4	Q03036	179 aa		4.06	□□□□□ -1.76
TRS120	YDR407C	RMD1	Q03441	430 aa		4.06	□□□□□ -1.76
TRS120	YDR407C	YCG1	Q06680	1035 aa		4.06	□□□□□ -1.76
TRS120	YDR407C	YEL076C-A	P0CX16	216 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	YLR464W	P0CX17	216 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
TRS120	YDR407C	RPO26	P20435	155 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	SET5	P38890	526 aa	Known RBP	4.05	□□□□□ -1.76
TRS120	YDR407C	YEL076C	P39971	216 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	VPS72	Q03388	795 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	DAS2	Q12084	232 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	BDF1	P35817	686 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	TOM71	P38825	639 aa	Known RBP	4.05	□□□□□ -1.76
TRS120	YDR407C	SHQ1	P40486	507 aa	Predicted RBP	4.05	□□□□□ -1.76
TRS120	YDR407C	SMC3	P47037	1230 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	VPS64	Q03944	604 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	SGD1	Q06132	899 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	CUR1	Q06469	252 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	YOR223W	Q12015	292 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	DPH6	Q12429	685 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	MAK16	P10962	306 aa	Predicted RBP	4.05	□□□□□ -1.76
TRS120	YDR407C	ECM1	P39715	212 aa		4.05	□□□□□ -1.76
TRS120	YDR407C	PXA1	P41909	870 aa		4.05	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 84.6 ms