RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU56	YDR240C	YHL050C	P38721	697 aa		4.98	□□□□□ -1.61
SNU56	YDR240C	YHR219W	P38900	624 aa		4.98	□□□□□ -1.61
SNU56	YDR240C	KIP3	P53086	805 aa	Known RBP	4.98	□□□□□ -1.61
SNU56	YDR240C	NUT1	P53114	1132 aa		4.98	□□□□□ -1.61
SNU56	YDR240C	GPI13	Q07830	1017 aa		4.98	□□□□□ -1.61
SNU56	YDR240C	DUR3	P33413	735 aa		4.97	□□□□□ -1.61
SNU56	YDR240C	UBP5	P39944	805 aa		4.97	□□□□□ -1.61
SNU56	YDR240C	YAF9	P53930	226 aa		4.97	□□□□□ -1.61
SNU56	YDR240C	YMR074C	Q04773	145 aa		4.97	□□□□□ -1.61
SNU56	YDR240C	INP54	Q08227	384 aa	Known RBP	4.97	□□□□□ -1.61
SNU56	YDR240C	GCD6	P32501	712 aa	Known RBP	4.96	□□□□□ -1.62
SNU56	YDR240C	ARL1	P38116	183 aa	Known RBP	4.96	□□□□□ -1.62
SNU56	YDR240C	RVS167	P39743	482 aa	Known RBP	4.96	□□□□□ -1.62
SNU56	YDR240C	UTP22	P53254	1237 aa	Predicted RBP	4.96	□□□□□ -1.62
SNU56	YDR240C	MEC3	Q02574	474 aa		4.95	□□□□□ -1.62
SNU56	YDR240C	GIC2	Q06648	383 aa		4.95	□□□□□ -1.62
SNU56	YDR240C	SHU2	P38957	223 aa		4.94	□□□□□ -1.62
SNU56	YDR240C	YCS4	Q06156	1176 aa		4.94	□□□□□ -1.62
SNU56	YDR240C	MSC6	Q08818	692 aa	Known RBP	4.94	□□□□□ -1.62
SNU56	YDR240C	SEC20	P28791	383 aa		4.94	□□□□□ -1.62
SNU56	YDR240C	VPS35	P34110	944 aa		4.94	□□□□□ -1.62
SNU56	YDR240C	DOT1	Q04089	582 aa	Known RBP	4.94	□□□□□ -1.62
SNU56	YDR240C	RNQ1	P25367	405 aa		4.93	□□□□□ -1.62
SNU56	YDR240C	MCM5	P29496	775 aa	Known RBP	4.93	□□□□□ -1.62
SNU56	YDR240C	PHO4	P07270	312 aa	Known RBP	4.92	□□□□□ -1.62
SNU56	YDR240C	REI1	P38344	393 aa	Predicted RBP	4.92	□□□□□ -1.62
SNU56	YDR240C	YOR059C	Q08448	450 aa	Known RBP	4.92	□□□□□ -1.62
SNU56	YDR240C	KAR2	P16474	682 aa	Known RBP	4.91	□□□□□ -1.62
SNU56	YDR240C	GPT2	P36148	743 aa		4.91	□□□□□ -1.62
SNU56	YDR240C	MMM1	P41800	426 aa		4.91	□□□□□ -1.62
SNU56	YDR240C	MON1	P53129	644 aa		4.91	□□□□□ -1.62
SNU56	YDR240C	MET4	P32389	672 aa		4.9	□□□□□ -1.62
SNU56	YDR240C	SEG2	P34250	1132 aa		4.9	□□□□□ -1.62
SNU56	YDR240C	YKL077W	P36081	392 aa		4.9	□□□□□ -1.62
SNU56	YDR240C	SEA4	P38164	1038 aa		4.9	□□□□□ -1.62
SNU56	YDR240C	NIT1	P40447	199 aa		4.9	□□□□□ -1.62
SNU56	YDR240C	CIT3	P43635	486 aa		4.9	□□□□□ -1.62
SNU56	YDR240C	SDH1	Q00711	640 aa		4.9	□□□□□ -1.62
SNU56	YDR240C	NOG1	Q02892	647 aa	Known RBP	4.9	□□□□□ -1.62
SNU56	YDR240C	NSI1	Q12457	570 aa		4.9	□□□□□ -1.62
SNU56	YDR240C	ECL1	P48235	211 aa		4.89	□□□□□ -1.63
SNU56	YDR240C	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.88	□□□□□ -1.63
SNU56	YDR240C	TY1A-DR6	P0CX70	440 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	TY1A-ER1	P0CX71	440 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	TY1A-LR2	P0CX72	440 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	TY1A-PL	P0CX73	440 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	TY1A-JR1	P0CX74	440 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	TY1A-LR3	P0CX75	440 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	TY1A-ML2	P0CX76	440 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	PRP40	P33203	583 aa	Known RBP	4.88	□□□□□ -1.63
SNU56	YDR240C	LRG1	P35688	1017 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	EXO5	P38289	585 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	OXR1	Q08952	273 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	TY1A-GR1	Q12085	440 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.88	□□□□□ -1.63
SNU56	YDR240C	TY1A-OL	Q92392	440 aa	Known RBP	4.88	□□□□□ -1.63
SNU56	YDR240C	MSH4	P40965	878 aa	Predicted RBP	4.88	□□□□□ -1.63
SNU56	YDR240C	MTR4	P47047	1073 aa	Known RBP	4.88	□□□□□ -1.63
SNU56	YDR240C	ALT1	P52893	592 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	WHI5	Q12416	295 aa		4.88	□□□□□ -1.63
SNU56	YDR240C	SMY2	P32909	740 aa	Known RBP	4.87	□□□□□ -1.63
SNU56	YDR240C	SLD2	P34252	453 aa		4.87	□□□□□ -1.63
SNU56	YDR240C	NNK1	P36003	928 aa		4.87	□□□□□ -1.63
SNU56	YDR240C	POL12	P38121	705 aa	Predicted RBP	4.87	□□□□□ -1.63
SNU56	YDR240C	DAK2	P43550	591 aa		4.87	□□□□□ -1.63
SNU56	YDR240C	SEN54	Q02825	467 aa	Predicted RBP	4.87	□□□□□ -1.63
SNU56	YDR240C	AVO1	Q08236	1176 aa		4.87	□□□□□ -1.63
SNU56	YDR240C	GCD1	P09032	578 aa	Predicted RBP	4.86	□□□□□ -1.63
SNU56	YDR240C	RPS4A	P0CX35	261 aa	Known RBP	4.86	□□□□□ -1.63
SNU56	YDR240C	RPS4B	P0CX36	261 aa	Known RBP	4.86	□□□□□ -1.63
SNU56	YDR240C	YCR015C	P25616	317 aa		4.86	□□□□□ -1.63
SNU56	YDR240C	WHI3	P34761	661 aa	Known RBP	4.86	□□□□□ -1.63
SNU56	YDR240C	THI12	P42883	340 aa		4.86	□□□□□ -1.63
SNU56	YDR240C	THI5	P43534	340 aa		4.86	□□□□□ -1.63
SNU56	YDR240C	THI11	P47183	340 aa		4.86	□□□□□ -1.63
SNU56	YDR240C	YGR045C	P53229	120 aa		4.86	□□□□□ -1.63
SNU56	YDR240C	THI13	Q07748	340 aa		4.86	□□□□□ -1.63
SNU56	YDR240C	ALG6	Q12001	544 aa	Known RBP	4.86	□□□□□ -1.63
SNU56	YDR240C	DFG16	Q99234	619 aa		4.86	□□□□□ -1.63
SNU56	YDR240C	VMA4	P22203	233 aa	Known RBP	4.85	□□□□□ -1.63
SNU56	YDR240C	SQT1	P35184	431 aa		4.85	□□□□□ -1.63
SNU56	YDR240C	NEM1	P38757	446 aa		4.85	□□□□□ -1.63
SNU56	YDR240C	PRP43	P53131	767 aa	Known RBP	4.85	□□□□□ -1.63
SNU56	YDR240C	RCM1	P53972	490 aa		4.85	□□□□□ -1.63
SNU56	YDR240C	ULP1	Q02724	621 aa		4.85	□□□□□ -1.63
SNU56	YDR240C	DAL4	Q04895	635 aa		4.85	□□□□□ -1.63
SNU56	YDR240C	MSH3	P25336	1018 aa		4.84	□□□□□ -1.63
SNU56	YDR240C	YKL222C	P35995	705 aa		4.84	□□□□□ -1.63
SNU56	YDR240C	SLS1	P42900	643 aa		4.84	□□□□□ -1.63
SNU56	YDR240C	RSM26	P47141	266 aa		4.84	□□□□□ -1.63
SNU56	YDR240C	NFS1	P25374	497 aa		4.83	□□□□□ -1.64
SNU56	YDR240C	HSE1	P38753	452 aa		4.83	□□□□□ -1.64
SNU56	YDR240C	IPL1	P38991	367 aa		4.83	□□□□□ -1.64
SNU56	YDR240C	YAR028W	P39548	234 aa		4.83	□□□□□ -1.64
SNU56	YDR240C	OYE3	P41816	400 aa	Predicted RBP	4.83	□□□□□ -1.64
SNU56	YDR240C	ELA1	P53861	379 aa	Predicted RBP	4.83	□□□□□ -1.64
SNU56	YDR240C	YPL109C	Q02981	657 aa		4.83	□□□□□ -1.64
SNU56	YDR240C	ADI1	Q03677	179 aa		4.83	□□□□□ -1.64
SNU56	YDR240C	UTP5	Q04177	643 aa	Known RBP	4.83	□□□□□ -1.64
SNU56	YDR240C	RKM2	Q03942	479 aa		4.82	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 54.2 ms