RNA–Protein interactions for RNA: ENST00000589897.1

TPM4-211, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-211ENST00000589897 PDGFDQ9GZP0 370 aaPredicted RBP11.72□□□□□ -0.53
TPM4-211ENST00000589897 ANO8Q9HCE9 1232 aaPredicted RBP11.72□□□□□ -0.53
TPM4-211ENST00000589897 SLC15A2Q16348 729 aa11.71□□□□□ -0.53
TPM4-211ENST00000589897 PCGF6Q9BYE7 350 aa11.71□□□□□ -0.53
TPM4-211ENST00000589897 TNS1Q9HBL0 1735 aaKnown RBP11.71□□□□□ -0.54
TPM4-211ENST00000589897 KTN1Q86UP2 1357 aaKnown RBP11.7□□□□□ -0.54
TPM4-211ENST00000589897 USP19O94966 1318 aa11.7□□□□□ -0.54
TPM4-211ENST00000589897 PROM2Q8N271 834 aa11.7□□□□□ -0.54
TPM4-211ENST00000589897 NRKQ7Z2Y5 1582 aa11.7□□□□□ -0.54
TPM4-211ENST00000589897 CPDO75976 1380 aa11.69□□□□□ -0.54
TPM4-211ENST00000589897 SOX12O15370 315 aa11.69□□□□□ -0.54
TPM4-211ENST00000589897 SLC24A1O60721 1099 aa11.69□□□□□ -0.54
TPM4-211ENST00000589897 DDB1Q16531 1140 aa11.69□□□□□ -0.54
TPM4-211ENST00000589897 HDGFL2Q7Z4V5 671 aaPredicted RBP11.69□□□□□ -0.54
TPM4-211ENST00000589897 SSH2Q76I76 1423 aa11.69□□□□□ -0.54
TPM4-211ENST00000589897 SBNO2Q9Y2G9 1366 aa11.68□□□□□ -0.54
TPM4-211ENST00000589897 TTC21BQ7Z4L5 1316 aa11.68□□□□□ -0.54
TPM4-211ENST00000589897 TTC21AQ8NDW8 1320 aa11.68□□□□□ -0.54
TPM4-211ENST00000589897 TXNRD1Q16881 649 aa11.68□□□□□ -0.54
TPM4-211ENST00000589897 KCNH5Q8NCM2 988 aa11.68□□□□□ -0.54
TPM4-211ENST00000589897 SGIP1Q9BQI5 828 aa11.68□□□□□ -0.54
TPM4-211ENST00000589897 MAP3K5Q99683 1374 aa11.67□□□□□ -0.54
TPM4-211ENST00000589897 AKAP12Q02952 1782 aa11.67□□□□□ -0.54
TPM4-211ENST00000589897 GRIN3BO60391 1043 aa11.67□□□□□ -0.54
TPM4-211ENST00000589897 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.67□□□□□ -0.54
TPM4-211ENST00000589897 CDCA7Q9BWT1 371 aaPredicted RBP11.67□□□□□ -0.54
TPM4-211ENST00000589897 TERF2IPQ9NYB0 399 aa11.67□□□□□ -0.54
TPM4-211ENST00000589897 OVOS2A0A0G2JMS6 1433 aa11.67□□□□□ -0.54
TPM4-211ENST00000589897 OVOS2A0A0J9YW53 1432 aa11.67□□□□□ -0.54
TPM4-211ENST00000589897 OVOS2Q6IE36 1432 aa11.67□□□□□ -0.54
TPM4-211ENST00000589897 ST20-MTHFSA0A0A6YYL1 179 aa11.66□□□□□ -0.54
TPM4-211ENST00000589897 PIK3C2AO00443 1686 aa11.65□□□□□ -0.54
TPM4-211ENST00000589897 RREB1Q92766 1687 aa11.65□□□□□ -0.54
TPM4-211ENST00000589897 CAMTA1Q9Y6Y1 1673 aa11.65□□□□□ -0.54
TPM4-211ENST00000589897 CSB-PGBD3P0DP91 1061 aa11.65□□□□□ -0.54
TPM4-211ENST00000589897 HSPA6P17066 643 aa11.65□□□□□ -0.54
TPM4-211ENST00000589897 TOM1L2Q6ZVM7 507 aa11.65□□□□□ -0.54
TPM4-211ENST00000589897 PELP1Q8IZL8 1130 aaKnown RBP11.65□□□□□ -0.54
TPM4-211ENST00000589897 SLC12A5Q9H2X9 1139 aa11.65□□□□□ -0.54
TPM4-211ENST00000589897 CPSF1Q10570 1443 aaKnown RBP11.65□□□□□ -0.54
TPM4-211ENST00000589897 AATKQ6ZMQ8 1374 aa11.65□□□□□ -0.55
TPM4-211ENST00000589897 NUP188Q5SRE5 1749 aa11.64□□□□□ -0.55
TPM4-211ENST00000589897 SLIT3O75094 1523 aa11.64□□□□□ -0.55
TPM4-211ENST00000589897 LMO7Q8WWI1 1683 aa11.63□□□□□ -0.55
TPM4-211ENST00000589897 POLD1P28340 1107 aa11.63□□□□□ -0.55
TPM4-211ENST00000589897 SLC16A10Q8TF71 515 aa11.63□□□□□ -0.55
TPM4-211ENST00000589897 PUS7Q96PZ0 661 aaKnown RBP11.63□□□□□ -0.55
TPM4-211ENST00000589897 TIMELESSQ9UNS1 1208 aa11.63□□□□□ -0.55
TPM4-211ENST00000589897 MON2Q7Z3U7 1717 aa11.63□□□□□ -0.55
TPM4-211ENST00000589897 COL5A2P05997 1499 aaPredicted RBP11.63□□□□□ -0.55
TPM4-211ENST00000589897 CRB1P82279 1406 aa11.62□□□□□ -0.55
TPM4-211ENST00000589897 TMF1P82094 1093 aa11.62□□□□□ -0.55
TPM4-211ENST00000589897 GPBP1L1Q9HC44 474 aaPredicted RBP11.62□□□□□ -0.55
TPM4-211ENST00000589897 CLSPNQ9HAW4 1339 aa11.61□□□□□ -0.55
TPM4-211ENST00000589897 BCL9O00512 1426 aa11.61□□□□□ -0.55
TPM4-211ENST00000589897 EXOC5O00471 708 aa11.61□□□□□ -0.55
TPM4-211ENST00000589897 PTF1AQ7RTS3 328 aa11.61□□□□□ -0.55
TPM4-211ENST00000589897 ARHGEF25Q86VW2 580 aa11.61□□□□□ -0.55
TPM4-211ENST00000589897 NME9Q86XW9 330 aa11.61□□□□□ -0.55
TPM4-211ENST00000589897 MARCH10Q8NA82 808 aaPredicted RBP11.61□□□□□ -0.55
TPM4-211ENST00000589897 CCER1Q8TC90 406 aaPredicted RBP11.61□□□□□ -0.55
TPM4-211ENST00000589897 USP47Q96K76 1375 aa11.61□□□□□ -0.55
TPM4-211ENST00000589897 WDR17Q8IZU2 1322 aa11.6□□□□□ -0.55
TPM4-211ENST00000589897 EDC4Q6P2E9 1401 aaKnown RBP11.6□□□□□ -0.55
TPM4-211ENST00000589897 CDCA8Q53HL2 280 aa11.6□□□□□ -0.55
TPM4-211ENST00000589897 KLHL34Q8N239 644 aa11.6□□□□□ -0.55
TPM4-211ENST00000589897 TESK2Q96S53 571 aa11.6□□□□□ -0.55
TPM4-211ENST00000589897 AXIN2Q9Y2T1 843 aa11.6□□□□□ -0.55
TPM4-211ENST00000589897 UTRNP46939 3433 aa11.6□□□□□ -0.55
TPM4-211ENST00000589897 RGPD5Q99666 1765 aa11.59□□□□□ -0.55
TPM4-211ENST00000589897 A0A1W2PP64 1363 aa11.59□□□□□ -0.55
TPM4-211ENST00000589897 CD163L1Q9NR16 1453 aa11.58□□□□□ -0.56
TPM4-211ENST00000589897 USP31Q70CQ4 1352 aa11.58□□□□□ -0.56
TPM4-211ENST00000589897 COG3Q96JB2 828 aa11.58□□□□□ -0.56
TPM4-211ENST00000589897 CHD4Q14839 1912 aa11.58□□□□□ -0.56
TPM4-211ENST00000589897 COL18A1P39060 1754 aa11.57□□□□□ -0.56
TPM4-211ENST00000589897 CARD10Q9BWT7 1032 aa11.57□□□□□ -0.56
TPM4-211ENST00000589897 NLRP2Q9NX02 1062 aa11.57□□□□□ -0.56
TPM4-211ENST00000589897 PARP4Q9UKK3 1724 aaKnown RBP11.57□□□□□ -0.56
TPM4-211ENST00000589897 NFAT5O94916 1531 aa11.56□□□□□ -0.56
TPM4-211ENST00000589897 APLP1P51693 650 aa11.56□□□□□ -0.56
TPM4-211ENST00000589897 LTN1O94822 1766 aa11.56□□□□□ -0.56
TPM4-211ENST00000589897 CASZ1Q86V15 1759 aa11.56□□□□□ -0.56
TPM4-211ENST00000589897 MYOM1P52179 1685 aa11.55□□□□□ -0.56
TPM4-211ENST00000589897 ABCC6O95255 1503 aa11.55□□□□□ -0.56
TPM4-211ENST00000589897 ANKRD36BQ8N2N9 1353 aa11.54□□□□□ -0.56
TPM4-211ENST00000589897 CCDC7Q96M83 1385 aa11.54□□□□□ -0.56
TPM4-211ENST00000589897 AMPHP49418 695 aa11.54□□□□□ -0.56
TPM4-211ENST00000589897 POLR3GLQ9BT43 218 aa11.54□□□□□ -0.56
TPM4-211ENST00000589897 USP54Q70EL1 1684 aa11.53□□□□□ -0.56
TPM4-211ENST00000589897 SLC27A3Q5K4L6 730 aa11.53□□□□□ -0.56
TPM4-211ENST00000589897 ANKRD24Q8TF21 1146 aa11.53□□□□□ -0.56
TPM4-211ENST00000589897 LTV1Q96GA3 475 aaPredicted RBP11.53□□□□□ -0.56
TPM4-211ENST00000589897 RGPD3A6NKT7 1758 aaPredicted RBP11.52□□□□□ -0.57
TPM4-211ENST00000589897 RGPD4Q7Z3J3 1758 aa11.52□□□□□ -0.57
TPM4-211ENST00000589897 WNK3Q9BYP7 1800 aa11.52□□□□□ -0.57
TPM4-211ENST00000589897 YBX3P16989 372 aaKnown RBP eCLIP11.52□□□□□ -0.57
TPM4-211ENST00000589897 NLGN2Q8NFZ4 835 aa11.52□□□□□ -0.57
TPM4-211ENST00000589897 TFCP2L1Q9NZI6 479 aa11.52□□□□□ -0.57
TPM4-211ENST00000589897 ERBB3P21860 1342 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms