RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 EMILIN1Q9Y6C2 1016 aa15□□□□□ -0.01
CLN3-224ENST00000566816 ABCA3Q99758 1704 aa15□□□□□ -0.01
CLN3-224ENST00000566816 ANKRD26Q9UPS8 1709 aa15□□□□□ -0.01
CLN3-224ENST00000566816 ANP32CO43423 234 aa14.99□□□□□ -0.01
CLN3-224ENST00000566816 USP21Q9UK80 565 aa14.99□□□□□ -0.01
CLN3-224ENST00000566816 AFF2P51816 1311 aa14.98□□□□□ -0.01
CLN3-224ENST00000566816 BCL9LQ86UU0 1499 aa14.98□□□□□ -0.01
CLN3-224ENST00000566816 VPS72Q15906 364 aa14.98□□□□□ -0.01
CLN3-224ENST00000566816 COL14A1Q05707 1796 aaKnown RBP14.98□□□□□ -0.01
CLN3-224ENST00000566816 MYBBP1AQ9BQG0 1328 aaKnown RBP14.97□□□□□ -0.01
CLN3-224ENST00000566816 EVA1CP58658 441 aa14.97□□□□□ -0.01
CLN3-224ENST00000566816 HSP90AB2PQ58FF8 381 aa14.97□□□□□ -0.01
CLN3-224ENST00000566816 CAMTA1Q9Y6Y1 1673 aa14.97□□□□□ -0.01
CLN3-224ENST00000566816 ERBB3P21860 1342 aa14.96□□□□□ -0.01
CLN3-224ENST00000566816 WDR17Q8IZU2 1322 aa14.96□□□□□ -0.01
CLN3-224ENST00000566816 TRPC5Q9UL62 973 aaPredicted RBP14.96□□□□□ -0.01
CLN3-224ENST00000566816 COL18A1P39060 1754 aa14.96□□□□□ -0.02
CLN3-224ENST00000566816 PPM1GO15355 546 aaPredicted RBP14.95□□□□□ -0.02
CLN3-224ENST00000566816 ANKRD24Q8TF21 1146 aa14.95□□□□□ -0.02
CLN3-224ENST00000566816 CFAP53Q96M91 514 aa14.95□□□□□ -0.02
CLN3-224ENST00000566816 CARD10Q9BWT7 1032 aa14.95□□□□□ -0.02
CLN3-224ENST00000566816 THRAP3Q9Y2W1 955 aaKnown RBP14.95□□□□□ -0.02
CLN3-224ENST00000566816 LMO7Q8WWI1 1683 aa14.95□□□□□ -0.02
CLN3-224ENST00000566816 COL5A2P05997 1499 aaPredicted RBP14.95□□□□□ -0.02
CLN3-224ENST00000566816 CDK12Q9NYV4 1490 aaPredicted RBP14.95□□□□□ -0.02
CLN3-224ENST00000566816 ZBTB7CA1YPR0 619 aa14.94□□□□□ -0.02
CLN3-224ENST00000566816 DIEXFQ68CQ4 756 aaKnown RBP14.94□□□□□ -0.02
CLN3-224ENST00000566816 QTRT2Q9H974 415 aaKnown RBP14.94□□□□□ -0.02
CLN3-224ENST00000566816 NWD2Q9ULI1 1742 aa14.93□□□□□ -0.02
CLN3-224ENST00000566816 CNGB1Q14028 1251 aaPredicted RBP14.93□□□□□ -0.02
CLN3-224ENST00000566816 RGS17Q9UGC6 210 aaPredicted RBP14.93□□□□□ -0.02
CLN3-224ENST00000566816 SPATA31A5Q5VU36 1347 aa14.92□□□□□ -0.02
CLN3-224ENST00000566816 SPATA31A7Q8IWB4 1347 aa14.92□□□□□ -0.02
CLN3-224ENST00000566816 ONECUT3O60422 494 aaPredicted RBP14.92□□□□□ -0.02
CLN3-224ENST00000566816 DIAPH1O60610 1272 aaKnown RBP14.92□□□□□ -0.02
CLN3-224ENST00000566816 IL13P35225 146 aa14.92□□□□□ -0.02
CLN3-224ENST00000566816 EIF4A2Q14240 407 aaKnown RBP14.92□□□□□ -0.02
CLN3-224ENST00000566816 GJD4Q96KN9 370 aaPredicted RBP14.92□□□□□ -0.02
CLN3-224ENST00000566816 PHF23Q9BUL5 403 aaPredicted RBP14.92□□□□□ -0.02
CLN3-224ENST00000566816 ATRNO75882 1429 aa14.92□□□□□ -0.02
CLN3-224ENST00000566816 CRB1P82279 1406 aa14.92□□□□□ -0.02
CLN3-224ENST00000566816 CSB-PGBD3P0DP91 1061 aa14.91□□□□□ -0.02
CLN3-224ENST00000566816 LARP1Q6PKG0 1096 aaKnown RBP14.91□□□□□ -0.02
CLN3-224ENST00000566816 BARGINQ6ZT62 677 aa14.91□□□□□ -0.02
CLN3-224ENST00000566816 TOM1L2Q6ZVM7 507 aa14.91□□□□□ -0.02
CLN3-224ENST00000566816 CDCA7Q9BWT1 371 aaPredicted RBP14.91□□□□□ -0.02
CLN3-224ENST00000566816 STRN4Q9NRL3 753 aa14.91□□□□□ -0.02
CLN3-224ENST00000566816 NUDCQ9Y266 331 aa14.91□□□□□ -0.02
CLN3-224ENST00000566816 MAP2P11137 1827 aaKnown RBP14.91□□□□□ -0.02
CLN3-224ENST00000566816 SPATA31A1Q5TZJ5 1347 aa14.91□□□□□ -0.02
CLN3-224ENST00000566816 PLEKHG2Q9H7P9 1386 aa14.9□□□□□ -0.02
CLN3-224ENST00000566816 RBM6P78332 1123 aaKnown RBP14.9□□□□□ -0.02
CLN3-224ENST00000566816 LTN1O94822 1766 aa14.89□□□□□ -0.03
CLN3-224ENST00000566816 NBPF6Q5VWK0 638 aa14.89□□□□□ -0.03
CLN3-224ENST00000566816 TCP11L2Q8N4U5 519 aa14.89□□□□□ -0.03
CLN3-224ENST00000566816 NBPF4Q96M43 638 aa14.89□□□□□ -0.03
CLN3-224ENST00000566816 EYA1Q99502 592 aa14.89□□□□□ -0.03
CLN3-224ENST00000566816 NLRP2Q9NX02 1062 aa14.89□□□□□ -0.03
CLN3-224ENST00000566816 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.89□□□□□ -0.03
CLN3-224ENST00000566816 PEAK1Q9H792 1746 aa14.88□□□□□ -0.03
CLN3-224ENST00000566816 IGSF1Q8N6C5 1336 aa14.88□□□□□ -0.03
CLN3-224ENST00000566816 NCAPD2Q15021 1401 aa14.87□□□□□ -0.03
CLN3-224ENST00000566816 CCER2I3L3R5 266 aa14.87□□□□□ -0.03
CLN3-224ENST00000566816 RXRBP28702 533 aa14.87□□□□□ -0.03
CLN3-224ENST00000566816 LTV1Q96GA3 475 aaPredicted RBP14.87□□□□□ -0.03
CLN3-224ENST00000566816 COL3A1P02461 1466 aaPredicted RBP14.87□□□□□ -0.03
CLN3-224ENST00000566816 PLCH1Q4KWH8 1693 aa14.87□□□□□ -0.03
CLN3-224ENST00000566816 POTEAQ6S8J7 498 aa14.86□□□□□ -0.03
CLN3-224ENST00000566816 NRAPQ86VF7 1730 aa14.86□□□□□ -0.03
CLN3-224ENST00000566816 KDRP35968 1356 aa14.85□□□□□ -0.03
CLN3-224ENST00000566816 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.85□□□□□ -0.03
CLN3-224ENST00000566816 CCDC9Q9Y3X0 531 aaKnown RBP14.85□□□□□ -0.03
CLN3-224ENST00000566816 FCHSD2O94868 740 aa14.84□□□□□ -0.03
CLN3-224ENST00000566816 PNNQ9H307 717 aaKnown RBP14.84□□□□□ -0.03
CLN3-224ENST00000566816 IL2RBP14784 551 aa14.83□□□□□ -0.04
CLN3-224ENST00000566816 FAM208AQ9UK61 1670 aaKnown RBP14.82□□□□□ -0.04
CLN3-224ENST00000566816 RAPGEF4Q8WZA2 1011 aa14.82□□□□□ -0.04
CLN3-224ENST00000566816 SULT6B1Q6IMI4 303 aa14.81□□□□□ -0.04
CLN3-224ENST00000566816 PNISRQ8TF01 805 aaKnown RBP14.81□□□□□ -0.04
CLN3-224ENST00000566816 USP35Q9P2H5 1018 aa14.81□□□□□ -0.04
CLN3-224ENST00000566816 DISP2A7MBM2 1401 aa14.81□□□□□ -0.04
CLN3-224ENST00000566816 EXOC5O00471 708 aa14.8□□□□□ -0.04
CLN3-224ENST00000566816 U2SURPO15042 1029 aaKnown RBP14.8□□□□□ -0.04
CLN3-224ENST00000566816 U2AF1L5P0DN76 240 aaPredicted RBP14.8□□□□□ -0.04
CLN3-224ENST00000566816 TATP17735 454 aaPredicted RBP14.8□□□□□ -0.04
CLN3-224ENST00000566816 U2AF1Q01081 240 aaKnown RBP eCLIP14.8□□□□□ -0.04
CLN3-224ENST00000566816 FAM98CQ17RN3 349 aaKnown RBP14.8□□□□□ -0.04
CLN3-224ENST00000566816 AMOTQ4VCS5 1084 aa14.8□□□□□ -0.04
CLN3-224ENST00000566816 MRS2Q9HD23 443 aa14.8□□□□□ -0.04
CLN3-224ENST00000566816 RGPD5Q99666 1765 aa14.8□□□□□ -0.04
CLN3-224ENST00000566816 GLI3P10071 1580 aa14.78□□□□□ -0.04
CLN3-224ENST00000566816 WDR43Q15061 677 aaKnown RBP eCLIP14.78□□□□□ -0.04
CLN3-224ENST00000566816 DDB1Q16531 1140 aa14.78□□□□□ -0.04
CLN3-224ENST00000566816 SEPT12Q8IYM1 358 aa14.78□□□□□ -0.04
CLN3-224ENST00000566816 MIER1Q8N108 512 aa14.78□□□□□ -0.04
CLN3-224ENST00000566816 RSPH6AQ9H0K4 717 aa14.78□□□□□ -0.04
CLN3-224ENST00000566816 CCDC184Q52MB2 194 aa14.77□□□□□ -0.05
CLN3-224ENST00000566816 PLEKHO1Q53GL0 409 aaPredicted RBP14.77□□□□□ -0.05
CLN3-224ENST00000566816 AEBP1Q8IUX7 1158 aa14.77□□□□□ -0.05
CLN3-224ENST00000566816 USHBP1Q8N6Y0 703 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms