RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 EIF4G2P78344 907 aaKnown RBP eCLIP9.93□□□□□ -0.82
LRRC28-220ENST00000561253 PTK2Q05397 1052 aa9.93□□□□□ -0.82
LRRC28-220ENST00000561253 HDGFL1Q5TGJ6 251 aa9.93□□□□□ -0.82
LRRC28-220ENST00000561253 RNF223E7ERA6 249 aa9.92□□□□□ -0.82
LRRC28-220ENST00000561253 ZBTB24O43167 697 aaPredicted RBP9.92□□□□□ -0.82
LRRC28-220ENST00000561253 SOX11P35716 441 aa9.92□□□□□ -0.82
LRRC28-220ENST00000561253 SEMA3FQ13275 785 aa9.92□□□□□ -0.82
LRRC28-220ENST00000561253 ANKLE1Q8NAG6 615 aa9.92□□□□□ -0.82
LRRC28-220ENST00000561253 GPSM3Q9Y4H4 160 aa9.92□□□□□ -0.82
LRRC28-220ENST00000561253 PRXQ9BXM0 1461 aa9.91□□□□□ -0.82
LRRC28-220ENST00000561253 PPP1R18Q6NYC8 613 aa9.9□□□□□ -0.82
LRRC28-220ENST00000561253 BAP1Q92560 729 aa9.9□□□□□ -0.82
LRRC28-220ENST00000561253 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.9□□□□□ -0.82
LRRC28-220ENST00000561253 GRIN2AQ12879 1464 aa9.9□□□□□ -0.83
LRRC28-220ENST00000561253 NUP160Q12769 1436 aa9.9□□□□□ -0.83
LRRC28-220ENST00000561253 CARMIL1Q5VZK9 1371 aa9.89□□□□□ -0.83
LRRC28-220ENST00000561253 LINC01559Q495D7 138 aa9.89□□□□□ -0.83
LRRC28-220ENST00000561253 ARHGAP9Q9BRR9 750 aa9.89□□□□□ -0.83
LRRC28-220ENST00000561253 ALG2Q9H553 416 aa9.89□□□□□ -0.83
LRRC28-220ENST00000561253 EEA1Q15075 1411 aa9.89□□□□□ -0.83
LRRC28-220ENST00000561253 CHD1O14646 1710 aa9.88□□□□□ -0.83
LRRC28-220ENST00000561253 CUL7Q14999 1698 aa9.88□□□□□ -0.83
LRRC28-220ENST00000561253 AGERQ15109 404 aa9.88□□□□□ -0.83
LRRC28-220ENST00000561253 ADAMTS19Q8TE59 1207 aa9.88□□□□□ -0.83
LRRC28-220ENST00000561253 CLASP1Q7Z460 1538 aa9.87□□□□□ -0.83
LRRC28-220ENST00000561253 SH3BP5LQ7L8J4 393 aa9.87□□□□□ -0.83
LRRC28-220ENST00000561253 ZBTB33Q86T24 672 aa9.87□□□□□ -0.83
LRRC28-220ENST00000561253 ZNF511Q8NB15 262 aa9.87□□□□□ -0.83
LRRC28-220ENST00000561253 CHMP7Q8WUX9 453 aaPredicted RBP9.87□□□□□ -0.83
LRRC28-220ENST00000561253 ZNF592Q92610 1267 aa9.87□□□□□ -0.83
LRRC28-220ENST00000561253 ARXQ96QS3 562 aa9.87□□□□□ -0.83
LRRC28-220ENST00000561253 BPHLQ86WA6 291 aaPredicted RBP9.86□□□□□ -0.83
LRRC28-220ENST00000561253 CARD14Q9BXL6 1004 aa9.86□□□□□ -0.83
LRRC28-220ENST00000561253 CEP170Q5SW79 1584 aa9.85□□□□□ -0.83
LRRC28-220ENST00000561253 MAGEB6P1A0A0J9YX57 407 aa9.85□□□□□ -0.83
LRRC28-220ENST00000561253 PLA2G2CQ5R387 149 aa9.85□□□□□ -0.83
LRRC28-220ENST00000561253 ADAM32Q8TC27 787 aa9.85□□□□□ -0.83
LRRC28-220ENST00000561253 OCSTAMPQ9BR26 566 aa9.85□□□□□ -0.83
LRRC28-220ENST00000561253 PCDHB9Q9Y5E1 797 aa9.85□□□□□ -0.83
LRRC28-220ENST00000561253 TRIM32Q13049 653 aa9.84□□□□□ -0.83
LRRC28-220ENST00000561253 IFFO2Q5TF58 517 aa9.84□□□□□ -0.83
LRRC28-220ENST00000561253 FOXJ1Q92949 421 aa9.84□□□□□ -0.83
LRRC28-220ENST00000561253 RAPGEF2Q9Y4G8 1499 aa9.84□□□□□ -0.83
LRRC28-220ENST00000561253 RPIAP49247 311 aa9.83□□□□□ -0.84
LRRC28-220ENST00000561253 MCCD1P59942 119 aaPredicted RBP9.83□□□□□ -0.84
LRRC28-220ENST00000561253 SH3BP2P78314 561 aa9.83□□□□□ -0.84
LRRC28-220ENST00000561253 SH3RF1Q7Z6J0 888 aa9.82□□□□□ -0.84
LRRC28-220ENST00000561253 HOMEZQ8IX15 550 aa9.82□□□□□ -0.84
LRRC28-220ENST00000561253 CD2BP2O95400 341 aaKnown RBP9.81□□□□□ -0.84
LRRC28-220ENST00000561253 DZIP3Q86Y13 1208 aaKnown RBP9.81□□□□□ -0.84
LRRC28-220ENST00000561253 PLA2G2EQ9NZK7 142 aa9.81□□□□□ -0.84
LRRC28-220ENST00000561253 WNT7BP56706 349 aa9.8□□□□□ -0.84
LRRC28-220ENST00000561253 PPP1R12CQ9BZL4 782 aa9.8□□□□□ -0.84
LRRC28-220ENST00000561253 KIAA0586Q9BVV6 1533 aa9.8□□□□□ -0.84
LRRC28-220ENST00000561253 ERFEQ4G0M1 354 aa9.79□□□□□ -0.84
LRRC28-220ENST00000561253 C4orf48Q5BLP8 95 aa9.79□□□□□ -0.84
LRRC28-220ENST00000561253 SLC10A4Q96EP9 437 aa9.79□□□□□ -0.84
LRRC28-220ENST00000561253 PALM3A6NDB9 673 aaPredicted RBP9.78□□□□□ -0.84
LRRC28-220ENST00000561253 SLFNL1Q499Z3 407 aa9.78□□□□□ -0.84
LRRC28-220ENST00000561253 FAM9AQ8IZU1 332 aaPredicted RBP9.78□□□□□ -0.84
LRRC28-220ENST00000561253 UCN2Q96RP3 112 aa9.78□□□□□ -0.84
LRRC28-220ENST00000561253 CEP126Q9P2H0 1117 aa9.78□□□□□ -0.84
LRRC28-220ENST00000561253 TFIP11Q9UBB9 837 aaKnown RBP9.78□□□□□ -0.84
LRRC28-220ENST00000561253 KIF21BO75037 1637 aa9.78□□□□□ -0.84
LRRC28-220ENST00000561253 SHROOM2Q13796 1616 aa9.78□□□□□ -0.84
LRRC28-220ENST00000561253 RFX1P22670 979 aa9.77□□□□□ -0.85
LRRC28-220ENST00000561253 SKOR1P84550 965 aa9.77□□□□□ -0.85
LRRC28-220ENST00000561253 LIAT1Q6ZQX7 453 aa9.77□□□□□ -0.85
LRRC28-220ENST00000561253 VARSP26640 1264 aaKnown RBP9.76□□□□□ -0.85
LRRC28-220ENST00000561253 SLC19A1P41440 591 aa9.76□□□□□ -0.85
LRRC28-220ENST00000561253 EHBP1Q8NDI1 1231 aa9.76□□□□□ -0.85
LRRC28-220ENST00000561253 FAM174AQ8TBP5 190 aa9.76□□□□□ -0.85
LRRC28-220ENST00000561253 ARHGEF11O15085 1522 aa9.76□□□□□ -0.85
LRRC28-220ENST00000561253 PIK3CDO00329 1044 aa9.75□□□□□ -0.85
LRRC28-220ENST00000561253 ATP9BO43861 1147 aa9.75□□□□□ -0.85
LRRC28-220ENST00000561253 LMOD1P29536 600 aaPredicted RBP9.75□□□□□ -0.85
LRRC28-220ENST00000561253 CFAP70Q5T0N1 1121 aa9.75□□□□□ -0.85
LRRC28-220ENST00000561253 TBC1D9Q6ZT07 1266 aa9.75□□□□□ -0.85
LRRC28-220ENST00000561253 RNF135Q8IUD6 432 aa9.75□□□□□ -0.85
LRRC28-220ENST00000561253 C1QTNF2Q9BXJ5 285 aa9.75□□□□□ -0.85
LRRC28-220ENST00000561253 ERCC6L2Q5T890 1561 aa9.75□□□□□ -0.85
LRRC28-220ENST00000561253 A0A0G2JS52 829 aa9.74□□□□□ -0.85
LRRC28-220ENST00000561253 SKIP12755 728 aa9.74□□□□□ -0.85
LRRC28-220ENST00000561253 NBPF20Q3BBV1 942 aa9.74□□□□□ -0.85
LRRC28-220ENST00000561253 TRMT44Q8IYL2 757 aaKnown RBP9.74□□□□□ -0.85
LRRC28-220ENST00000561253 NFATC2IPQ8NCF5 419 aa9.74□□□□□ -0.85
LRRC28-220ENST00000561253 CDV3Q9UKY7 258 aaKnown RBP9.74□□□□□ -0.85
LRRC28-220ENST00000561253 RC3H1Q5TC82 1133 aaKnown RBP9.73□□□□□ -0.85
LRRC28-220ENST00000561253 EMID1Q96A84 441 aaPredicted RBP9.73□□□□□ -0.85
LRRC28-220ENST00000561253 UGGT2Q9NYU1 1516 aa9.72□□□□□ -0.85
LRRC28-220ENST00000561253 IQGAP2Q13576 1575 aa9.72□□□□□ -0.85
LRRC28-220ENST00000561253 PPP1R15AO75807 674 aaPredicted RBP9.72□□□□□ -0.85
LRRC28-220ENST00000561253 PBXIP1Q96AQ6 731 aa9.72□□□□□ -0.85
LRRC28-220ENST00000561253 MAFBQ9Y5Q3 323 aaPredicted RBP9.72□□□□□ -0.85
LRRC28-220ENST00000561253 GOLGA3Q08378 1498 aa9.72□□□□□ -0.85
LRRC28-220ENST00000561253 ARAP1Q96P48 1450 aa9.72□□□□□ -0.85
LRRC28-220ENST00000561253 RIMBP3CA6NJZ7 1639 aa9.71□□□□□ -0.85
LRRC28-220ENST00000561253 RIMBP3BA6NNM3 1639 aa9.71□□□□□ -0.85
LRRC28-220ENST00000561253 RIMBP3Q9UFD9 1639 aa9.71□□□□□ -0.85
LRRC28-220ENST00000561253 RNF20Q5VTR2 975 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms