RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 EMILIN1Q9Y6C2 1016 aa7.46□□□□□ -1.22
ATXN3-240ENST00000556339 SH3BP5LQ7L8J4 393 aa7.45□□□□□ -1.22
ATXN3-240ENST00000556339 SLC10A4Q96EP9 437 aa7.45□□□□□ -1.22
ATXN3-240ENST00000556339 ARHGAP9Q9BRR9 750 aa7.45□□□□□ -1.22
ATXN3-240ENST00000556339 C1QTNF2Q9BXJ5 285 aa7.45□□□□□ -1.22
ATXN3-240ENST00000556339 CTDSPL2Q05D32 466 aa7.44□□□□□ -1.22
ATXN3-240ENST00000556339 ZBTB33Q86T24 672 aa7.44□□□□□ -1.22
ATXN3-240ENST00000556339 TRMT44Q8IYL2 757 aaKnown RBP7.44□□□□□ -1.22
ATXN3-240ENST00000556339 TSEN34Q9BSV6 310 aaKnown RBP7.44□□□□□ -1.22
ATXN3-240ENST00000556339 PGPEP1Q9NXJ5 209 aa7.44□□□□□ -1.22
ATXN3-240ENST00000556339 ERFEQ4G0M1 354 aa7.43□□□□□ -1.22
ATXN3-240ENST00000556339 LRRN4Q8WUT4 740 aa7.42□□□□□ -1.22
ATXN3-240ENST00000556339 PDXDC2PQ6P474 469 aa7.41□□□□□ -1.22
ATXN3-240ENST00000556339 PNMA1Q8ND90 353 aa7.41□□□□□ -1.22
ATXN3-240ENST00000556339 DDRGK1Q96HY6 314 aa7.41□□□□□ -1.22
ATXN3-240ENST00000556339 FKBPLQ9UIM3 349 aa7.41□□□□□ -1.22
ATXN3-240ENST00000556339 DNMT3LQ9UJW3 386 aa7.41□□□□□ -1.22
ATXN3-240ENST00000556339 CDV3Q9UKY7 258 aaKnown RBP7.41□□□□□ -1.22
ATXN3-240ENST00000556339 TTLL8A6PVC2 850 aa7.4□□□□□ -1.22
ATXN3-240ENST00000556339 PPFIA3O75145 1194 aa7.4□□□□□ -1.22
ATXN3-240ENST00000556339 AP1G2O75843 785 aa7.4□□□□□ -1.22
ATXN3-240ENST00000556339 NR6A1Q15406 480 aa7.4□□□□□ -1.22
ATXN3-240ENST00000556339 SKIV2LQ15477 1246 aaKnown RBP7.4□□□□□ -1.22
ATXN3-240ENST00000556339 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.4□□□□□ -1.22
ATXN3-240ENST00000556339 PPP1R26Q5T8A7 1209 aaPredicted RBP7.4□□□□□ -1.22
ATXN3-240ENST00000556339 KCTD15Q96SI1 283 aaPredicted RBP7.4□□□□□ -1.22
ATXN3-240ENST00000556339 SOS2Q07890 1332 aaPredicted RBP7.4□□□□□ -1.22
ATXN3-240ENST00000556339 VSIG8P0DPA2 414 aa7.39□□□□□ -1.23
ATXN3-240ENST00000556339 PTK2Q05397 1052 aa7.39□□□□□ -1.23
ATXN3-240ENST00000556339 DHX9Q08211 1270 aaKnown RBP7.39□□□□□ -1.23
ATXN3-240ENST00000556339 ZC3H4Q9UPT8 1303 aaKnown RBP7.38□□□□□ -1.23
ATXN3-240ENST00000556339 FIGNL2A6NMB9 653 aa7.38□□□□□ -1.23
ATXN3-240ENST00000556339 CBLBQ13191 982 aa7.38□□□□□ -1.23
ATXN3-240ENST00000556339 SH3D19Q5HYK7 790 aa7.38□□□□□ -1.23
ATXN3-240ENST00000556339 KDM4CQ9H3R0 1056 aa7.38□□□□□ -1.23
ATXN3-240ENST00000556339 GPBP1L1Q9HC44 474 aaPredicted RBP7.38□□□□□ -1.23
ATXN3-240ENST00000556339 RAB15P59190 212 aa7.37□□□□□ -1.23
ATXN3-240ENST00000556339 PROCA1Q8NCQ7 364 aaPredicted RBP7.37□□□□□ -1.23
ATXN3-240ENST00000556339 NBPF20Q3BBV1 942 aa7.36□□□□□ -1.23
ATXN3-240ENST00000556339 FAM117AQ9C073 453 aa7.36□□□□□ -1.23
ATXN3-240ENST00000556339 LORP23490 312 aaPredicted RBP7.35□□□□□ -1.23
ATXN3-240ENST00000556339 RELBQ01201 579 aa7.35□□□□□ -1.23
ATXN3-240ENST00000556339 PTSQ03393 145 aa7.35□□□□□ -1.23
ATXN3-240ENST00000556339 INTS6LQ5JSJ4 861 aaKnown RBP7.34□□□□□ -1.23
ATXN3-240ENST00000556339 DZIP3Q86Y13 1208 aaKnown RBP7.34□□□□□ -1.23
ATXN3-240ENST00000556339 ADAM32Q8TC27 787 aa7.34□□□□□ -1.23
ATXN3-240ENST00000556339 POLMQ9NP87 494 aaPredicted RBP7.34□□□□□ -1.23
ATXN3-240ENST00000556339 SPINT1O43278 529 aa7.33□□□□□ -1.24
ATXN3-240ENST00000556339 USP17L8P0C7I0 530 aa7.33□□□□□ -1.24
ATXN3-240ENST00000556339 Q6ZVU0 165 aa7.33□□□□□ -1.24
ATXN3-240ENST00000556339 AGBL1Q96MI9 1066 aa7.33□□□□□ -1.24
ATXN3-240ENST00000556339 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.33□□□□□ -1.24
ATXN3-240ENST00000556339 GPSM3Q9Y4H4 160 aa7.33□□□□□ -1.24
ATXN3-240ENST00000556339 CDC14CA4D256 554 aa7.32□□□□□ -1.24
ATXN3-240ENST00000556339 PPP2R2DQ66LE6 453 aa7.32□□□□□ -1.24
ATXN3-240ENST00000556339 CNTNAP3BQ96NU0 1288 aa7.32□□□□□ -1.24
ATXN3-240ENST00000556339 CNTNAP3Q9BZ76 1288 aa7.32□□□□□ -1.24
ATXN3-240ENST00000556339 CCDC155Q8N6L0 562 aa7.31□□□□□ -1.24
ATXN3-240ENST00000556339 BCANQ96GW7 911 aa7.31□□□□□ -1.24
ATXN3-240ENST00000556339 INSM2Q96T92 566 aaPredicted RBP7.31□□□□□ -1.24
ATXN3-240ENST00000556339 CTSOP43234 321 aaPredicted RBP7.3□□□□□ -1.24
ATXN3-240ENST00000556339 FBXO31Q5XUX0 539 aaPredicted RBP7.3□□□□□ -1.24
ATXN3-240ENST00000556339 TRIM52Q96A61 297 aa7.3□□□□□ -1.24
ATXN3-240ENST00000556339 ZNF395Q9H8N7 513 aaPredicted RBP7.3□□□□□ -1.24
ATXN3-240ENST00000556339 TMPRSS4Q9NRS4 437 aa7.3□□□□□ -1.24
ATXN3-240ENST00000556339 ZNF784Q8NCA9 323 aaPredicted RBP7.29□□□□□ -1.24
ATXN3-240ENST00000556339 EPS8L1Q8TE68 723 aa7.29□□□□□ -1.24
ATXN3-240ENST00000556339 PCMTD1Q96MG8 357 aaPredicted RBP7.29□□□□□ -1.24
ATXN3-240ENST00000556339 HMX1Q9NP08 348 aaPredicted RBP7.29□□□□□ -1.24
ATXN3-240ENST00000556339 ERCC6Q03468 1493 aa7.29□□□□□ -1.24
ATXN3-240ENST00000556339 RFC5P40937 340 aa7.28□□□□□ -1.24
ATXN3-240ENST00000556339 COL25A1Q9BXS0 654 aaPredicted RBP7.28□□□□□ -1.24
ATXN3-240ENST00000556339 ERVH48-1M5A8F1 160 aa7.27□□□□□ -1.25
ATXN3-240ENST00000556339 ADH1AP07327 375 aa7.27□□□□□ -1.25
ATXN3-240ENST00000556339 ITGA6P23229 1130 aa7.27□□□□□ -1.25
ATXN3-240ENST00000556339 SV2AQ7L0J3 742 aa7.27□□□□□ -1.25
ATXN3-240ENST00000556339 SVOPQ8N4V2 548 aa7.27□□□□□ -1.25
ATXN3-240ENST00000556339 GPR161Q8N6U8 529 aaKnown RBP7.27□□□□□ -1.25
ATXN3-240ENST00000556339 OCSTAMPQ9BR26 566 aa7.27□□□□□ -1.25
ATXN3-240ENST00000556339 NCAPD3P42695 1498 aa7.26□□□□□ -1.25
ATXN3-240ENST00000556339 SLC35F4A4IF30 521 aa7.26□□□□□ -1.25
ATXN3-240ENST00000556339 RNF225M0QZC1 329 aaPredicted RBP7.26□□□□□ -1.25
ATXN3-240ENST00000556339 VWA5B2Q8N398 1253 aa7.26□□□□□ -1.25
ATXN3-240ENST00000556339 ATAD2BQ9ULI0 1458 aa7.25□□□□□ -1.25
ATXN3-240ENST00000556339 KRT76Q01546 638 aa7.25□□□□□ -1.25
ATXN3-240ENST00000556339 RNF217Q8TC41 542 aa7.25□□□□□ -1.25
ATXN3-240ENST00000556339 NANOS1Q8WY41 292 aaKnown RBP7.25□□□□□ -1.25
ATXN3-240ENST00000556339 CYLDQ9NQC7 956 aa7.25□□□□□ -1.25
ATXN3-240ENST00000556339 PCDHB9Q9Y5E1 797 aa7.25□□□□□ -1.25
ATXN3-240ENST00000556339 PTGIRP43119 386 aa7.24□□□□□ -1.25
ATXN3-240ENST00000556339 LYSMD3Q7Z3D4 306 aa7.24□□□□□ -1.25
ATXN3-240ENST00000556339 SMARCA2P51531 1590 aa7.24□□□□□ -1.25
ATXN3-240ENST00000556339 TMEM259Q4ZIN3 620 aa7.23□□□□□ -1.25
ATXN3-240ENST00000556339 SEPT12Q8IYM1 358 aa7.23□□□□□ -1.25
ATXN3-240ENST00000556339 ZBBXA8MT70 800 aa7.22□□□□□ -1.25
ATXN3-240ENST00000556339 MEN1O00255 615 aa7.22□□□□□ -1.25
ATXN3-240ENST00000556339 ADD1P35611 737 aaKnown RBP7.22□□□□□ -1.25
ATXN3-240ENST00000556339 KCNMA1Q12791 1236 aa7.22□□□□□ -1.25
ATXN3-240ENST00000556339 NEUROD2Q15784 382 aa7.22□□□□□ -1.25
ATXN3-240ENST00000556339 RNFT1Q5M7Z0 435 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms