RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 IGF1RP08069 1367 aa10.28□□□□□ -0.76
LINC00643-203ENST00000555518 CFAP99D6REC4 459 aa10.28□□□□□ -0.76
LINC00643-203ENST00000555518 VSIG8P0DPA2 414 aa10.28□□□□□ -0.76
LINC00643-203ENST00000555518 AGERQ15109 404 aa10.28□□□□□ -0.76
LINC00643-203ENST00000555518 VEGFBP49765 207 aa10.27□□□□□ -0.77
LINC00643-203ENST00000555518 ARID5BQ14865 1188 aa10.27□□□□□ -0.77
LINC00643-203ENST00000555518 RIC3Q7Z5B4 369 aa10.27□□□□□ -0.77
LINC00643-203ENST00000555518 PARP9Q8IXQ6 854 aa10.27□□□□□ -0.77
LINC00643-203ENST00000555518 PCDHB15Q9Y5E8 787 aa10.27□□□□□ -0.77
LINC00643-203ENST00000555518 ZNF608Q9ULD9 1512 aaPredicted RBP10.27□□□□□ -0.77
LINC00643-203ENST00000555518 TDRD9Q8NDG6 1382 aaKnown RBP10.26□□□□□ -0.77
LINC00643-203ENST00000555518 ZIC2O95409 532 aaPredicted RBP10.26□□□□□ -0.77
LINC00643-203ENST00000555518 TUSC1Q2TAM9 212 aa10.26□□□□□ -0.77
LINC00643-203ENST00000555518 ERBB4Q15303 1308 aa10.26□□□□□ -0.77
LINC00643-203ENST00000555518 MAN1A2O60476 641 aa10.25□□□□□ -0.77
LINC00643-203ENST00000555518 LORP23490 312 aaPredicted RBP10.25□□□□□ -0.77
LINC00643-203ENST00000555518 NBPF14Q5TI25 921 aa10.25□□□□□ -0.77
LINC00643-203ENST00000555518 FOXJ1Q92949 421 aa10.25□□□□□ -0.77
LINC00643-203ENST00000555518 AK7Q96M32 723 aa10.25□□□□□ -0.77
LINC00643-203ENST00000555518 MAP10Q9P2G4 905 aa10.25□□□□□ -0.77
LINC00643-203ENST00000555518 GAPVD1Q14C86 1478 aa10.24□□□□□ -0.77
LINC00643-203ENST00000555518 RAPGEF2Q9Y4G8 1499 aa10.24□□□□□ -0.77
LINC00643-203ENST00000555518 ERICH3Q5RHP9 1530 aa10.24□□□□□ -0.77
LINC00643-203ENST00000555518 AQRO60306 1485 aaKnown RBP eCLIP10.23□□□□□ -0.77
LINC00643-203ENST00000555518 GOLGA3Q08378 1498 aa10.23□□□□□ -0.77
LINC00643-203ENST00000555518 TRIM66O15016 1216 aa10.23□□□□□ -0.77
LINC00643-203ENST00000555518 MAP4K5Q9Y4K4 846 aa10.23□□□□□ -0.77
LINC00643-203ENST00000555518 ITPKCQ96DU7 683 aa10.22□□□□□ -0.77
LINC00643-203ENST00000555518 EIF4G3O43432 1585 aaKnown RBP10.22□□□□□ -0.77
LINC00643-203ENST00000555518 NUTM2BA6NNL0 878 aaPredicted RBP10.21□□□□□ -0.77
LINC00643-203ENST00000555518 NUTM2EB1AL46 878 aaPredicted RBP10.21□□□□□ -0.77
LINC00643-203ENST00000555518 GRM5P41594 1212 aa10.21□□□□□ -0.77
LINC00643-203ENST00000555518 NUTM2DQ5VT03 806 aaPredicted RBP10.21□□□□□ -0.77
LINC00643-203ENST00000555518 NUTM2AQ8IVF1 878 aaPredicted RBP10.21□□□□□ -0.77
LINC00643-203ENST00000555518 HELBQ8NG08 1087 aaPredicted RBP10.21□□□□□ -0.77
LINC00643-203ENST00000555518 CUL7Q14999 1698 aa10.21□□□□□ -0.78
LINC00643-203ENST00000555518 PBRM1Q86U86 1689 aa10.21□□□□□ -0.78
LINC00643-203ENST00000555518 BMP2P12643 396 aa10.2□□□□□ -0.78
LINC00643-203ENST00000555518 CARMIL1Q5VZK9 1371 aa10.2□□□□□ -0.78
LINC00643-203ENST00000555518 MEIOBQ8N635 442 aa10.2□□□□□ -0.78
LINC00643-203ENST00000555518 GPKOWQ92917 476 aaPredicted RBP eCLIP10.2□□□□□ -0.78
LINC00643-203ENST00000555518 C1QTNF2Q9BXJ5 285 aa10.2□□□□□ -0.78
LINC00643-203ENST00000555518 ZFAND3Q9H8U3 227 aa10.2□□□□□ -0.78
LINC00643-203ENST00000555518 GRIN2BQ13224 1484 aa10.19□□□□□ -0.78
LINC00643-203ENST00000555518 TNIKQ9UKE5 1360 aa10.19□□□□□ -0.78
LINC00643-203ENST00000555518 NR3C2P08235 984 aa10.19□□□□□ -0.78
LINC00643-203ENST00000555518 C6orf118Q5T5N4 469 aa10.19□□□□□ -0.78
LINC00643-203ENST00000555518 TRMT44Q8IYL2 757 aaKnown RBP10.19□□□□□ -0.78
LINC00643-203ENST00000555518 LINC00528Q8N1L1 170 aa10.19□□□□□ -0.78
LINC00643-203ENST00000555518 CABLES1Q8TDN4 633 aa10.19□□□□□ -0.78
LINC00643-203ENST00000555518 TSEN34Q9BSV6 310 aaKnown RBP10.19□□□□□ -0.78
LINC00643-203ENST00000555518 EMILIN1Q9Y6C2 1016 aa10.19□□□□□ -0.78
LINC00643-203ENST00000555518 ADAMTS12P58397 1594 aa10.18□□□□□ -0.78
LINC00643-203ENST00000555518 C4orf48Q5BLP8 95 aa10.18□□□□□ -0.78
LINC00643-203ENST00000555518 SH3RF1Q7Z6J0 888 aa10.18□□□□□ -0.78
LINC00643-203ENST00000555518 TSC1Q92574 1164 aa10.18□□□□□ -0.78
LINC00643-203ENST00000555518 CSPP1Q1MSJ5 1256 aa10.17□□□□□ -0.78
LINC00643-203ENST00000555518 VASH1Q7L8A9 365 aaPredicted RBP10.17□□□□□ -0.78
LINC00643-203ENST00000555518 SOBPA7XYQ1 873 aa10.16□□□□□ -0.78
LINC00643-203ENST00000555518 PER1O15534 1290 aaPredicted RBP10.16□□□□□ -0.78
LINC00643-203ENST00000555518 LILRB3O75022 631 aa10.16□□□□□ -0.78
LINC00643-203ENST00000555518 PPFIA3O75145 1194 aa10.16□□□□□ -0.78
LINC00643-203ENST00000555518 MYSM1Q5VVJ2 828 aa10.16□□□□□ -0.78
LINC00643-203ENST00000555518 SOS2Q07890 1332 aaPredicted RBP10.15□□□□□ -0.78
LINC00643-203ENST00000555518 FSHRP23945 695 aa10.15□□□□□ -0.78
LINC00643-203ENST00000555518 RSPH6AQ9H0K4 717 aa10.15□□□□□ -0.78
LINC00643-203ENST00000555518 SNAPC4Q5SXM2 1469 aa10.15□□□□□ -0.78
LINC00643-203ENST00000555518 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.14□□□□□ -0.79
LINC00643-203ENST00000555518 SH3BP5LQ7L8J4 393 aa10.14□□□□□ -0.79
LINC00643-203ENST00000555518 CCDC116Q8IYX3 515 aa10.14□□□□□ -0.79
LINC00643-203ENST00000555518 CDV3Q9UKY7 258 aaKnown RBP10.14□□□□□ -0.79
LINC00643-203ENST00000555518 FHAD1B1AJZ9 1412 aa10.14□□□□□ -0.79
LINC00643-203ENST00000555518 PGPEP1Q9NXJ5 209 aa10.13□□□□□ -0.79
LINC00643-203ENST00000555518 LIMD1Q9UGP4 676 aa10.13□□□□□ -0.79
LINC00643-203ENST00000555518 MAGI1Q96QZ7 1491 aaPredicted RBP10.12□□□□□ -0.79
LINC00643-203ENST00000555518 PDE4DQ08499 809 aa10.12□□□□□ -0.79
LINC00643-203ENST00000555518 QPCTQ16769 361 aa10.12□□□□□ -0.79
LINC00643-203ENST00000555518 CEP162Q5TB80 1403 aa10.12□□□□□ -0.79
LINC00643-203ENST00000555518 MAGEB6P1A0A0J9YX57 407 aa10.1□□□□□ -0.79
LINC00643-203ENST00000555518 UBTFP17480 764 aaKnown RBP10.1□□□□□ -0.79
LINC00643-203ENST00000555518 DNMT3LQ9UJW3 386 aa10.1□□□□□ -0.79
LINC00643-203ENST00000555518 TTLL8A6PVC2 850 aa10.09□□□□□ -0.79
LINC00643-203ENST00000555518 CLK2P49760 499 aaKnown RBP10.09□□□□□ -0.79
LINC00643-203ENST00000555518 KCNMA1Q12791 1236 aa10.09□□□□□ -0.79
LINC00643-203ENST00000555518 SYNJ2O15056 1496 aa10.09□□□□□ -0.79
LINC00643-203ENST00000555518 RNF225M0QZC1 329 aaPredicted RBP10.08□□□□□ -0.8
LINC00643-203ENST00000555518 DHX9Q08211 1270 aaKnown RBP10.08□□□□□ -0.8
LINC00643-203ENST00000555518 PDXDC2PQ6P474 469 aa10.08□□□□□ -0.8
LINC00643-203ENST00000555518 BCANQ96GW7 911 aa10.08□□□□□ -0.8
LINC00643-203ENST00000555518 GRIN2AQ12879 1464 aa10.08□□□□□ -0.8
LINC00643-203ENST00000555518 CLIP1P30622 1438 aa10.07□□□□□ -0.8
LINC00643-203ENST00000555518 ZC3H4Q9UPT8 1303 aaKnown RBP10.07□□□□□ -0.8
LINC00643-203ENST00000555518 CTTNBP2Q8WZ74 1663 aa10.06□□□□□ -0.8
LINC00643-203ENST00000555518 ERFEQ4G0M1 354 aa10.06□□□□□ -0.8
LINC00643-203ENST00000555518 Q6ZVU0 165 aa10.06□□□□□ -0.8
LINC00643-203ENST00000555518 RTL5Q5HYW3 569 aaPredicted RBP10.05□□□□□ -0.8
LINC00643-203ENST00000555518 PPP1R26Q5T8A7 1209 aaPredicted RBP10.05□□□□□ -0.8
LINC00643-203ENST00000555518 NANOS1Q8WY41 292 aaKnown RBP10.05□□□□□ -0.8
LINC00643-203ENST00000555518 SLC10A4Q96EP9 437 aa10.05□□□□□ -0.8
LINC00643-203ENST00000555518 CARD14Q9BXL6 1004 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms