RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 KIF24Q5T7B8 1368 aa14.8□□□□□ -0.04
SHMT2-218ENST00000555213 BLMP54132 1417 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-218ENST00000555213 BCL9LQ86UU0 1499 aa14.8□□□□□ -0.04
SHMT2-218ENST00000555213 LTN1O94822 1766 aa14.8□□□□□ -0.04
SHMT2-218ENST00000555213 TNNT2P45379 298 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-218ENST00000555213 EVA1CP58658 441 aa14.79□□□□□ -0.04
SHMT2-218ENST00000555213 MAP3K19Q56UN5 1328 aa14.79□□□□□ -0.04
SHMT2-218ENST00000555213 PRKRIP1Q9H875 184 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-218ENST00000555213 NRAPQ86VF7 1730 aa14.78□□□□□ -0.04
SHMT2-218ENST00000555213 COL5A2P05997 1499 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-218ENST00000555213 FLT4P35916 1363 aa14.78□□□□□ -0.04
SHMT2-218ENST00000555213 ANP32CO43423 234 aa14.78□□□□□ -0.04
SHMT2-218ENST00000555213 RRS1Q15050 365 aaKnown RBP14.78□□□□□ -0.04
SHMT2-218ENST00000555213 STRN4Q9NRL3 753 aa14.78□□□□□ -0.04
SHMT2-218ENST00000555213 CCDC9Q9Y3X0 531 aaKnown RBP14.78□□□□□ -0.04
SHMT2-218ENST00000555213 CAMTA1Q9Y6Y1 1673 aa14.77□□□□□ -0.04
SHMT2-218ENST00000555213 ATRNO75882 1429 aa14.77□□□□□ -0.04
SHMT2-218ENST00000555213 SMG6Q86US8 1419 aaKnown RBP14.77□□□□□ -0.04
SHMT2-218ENST00000555213 CSB-PGBD3P0DP91 1061 aa14.77□□□□□ -0.05
SHMT2-218ENST00000555213 CNGB1Q14028 1251 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-218ENST00000555213 PPM1GO15355 546 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-218ENST00000555213 VPS72Q15906 364 aa14.76□□□□□ -0.05
SHMT2-218ENST00000555213 IP6K1Q92551 441 aa14.76□□□□□ -0.05
SHMT2-218ENST00000555213 QTRT2Q9H974 415 aaKnown RBP14.76□□□□□ -0.05
SHMT2-218ENST00000555213 CCER2I3L3R5 266 aa14.75□□□□□ -0.05
SHMT2-218ENST00000555213 HOXC9P31274 260 aa14.75□□□□□ -0.05
SHMT2-218ENST00000555213 COL18A1P39060 1754 aa14.75□□□□□ -0.05
SHMT2-218ENST00000555213 ERBB3P21860 1342 aa14.74□□□□□ -0.05
SHMT2-218ENST00000555213 WDR17Q8IZU2 1322 aa14.74□□□□□ -0.05
SHMT2-218ENST00000555213 FBLN1P23142 703 aa14.74□□□□□ -0.05
SHMT2-218ENST00000555213 RXRBP28702 533 aa14.74□□□□□ -0.05
SHMT2-218ENST00000555213 RBM6P78332 1123 aaKnown RBP14.74□□□□□ -0.05
SHMT2-218ENST00000555213 CCDC184Q52MB2 194 aa14.74□□□□□ -0.05
SHMT2-218ENST00000555213 EMILIN1Q9Y6C2 1016 aa14.74□□□□□ -0.05
SHMT2-218ENST00000555213 CDK12Q9NYV4 1490 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-218ENST00000555213 CRB1P82279 1406 aa14.74□□□□□ -0.05
SHMT2-218ENST00000555213 TOM1L2Q6ZVM7 507 aa14.73□□□□□ -0.05
SHMT2-218ENST00000555213 ANKRD24Q8TF21 1146 aa14.73□□□□□ -0.05
SHMT2-218ENST00000555213 GJD4Q96KN9 370 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-218ENST00000555213 AXIN2Q9Y2T1 843 aa14.73□□□□□ -0.05
SHMT2-218ENST00000555213 INSRP06213 1382 aa14.73□□□□□ -0.05
SHMT2-218ENST00000555213 SPATA31A5Q5VU36 1347 aa14.72□□□□□ -0.05
SHMT2-218ENST00000555213 SPATA31A7Q8IWB4 1347 aa14.72□□□□□ -0.05
SHMT2-218ENST00000555213 LARP1Q6PKG0 1096 aaKnown RBP14.72□□□□□ -0.05
SHMT2-218ENST00000555213 POLKQ9UBT6 870 aa14.72□□□□□ -0.05
SHMT2-218ENST00000555213 FAM208AQ9UK61 1670 aaKnown RBP14.71□□□□□ -0.05
SHMT2-218ENST00000555213 LTV1Q96GA3 475 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-218ENST00000555213 PEAK1Q9H792 1746 aa14.71□□□□□ -0.05
SHMT2-218ENST00000555213 PARD3Q8TEW0 1356 aa14.71□□□□□ -0.06
SHMT2-218ENST00000555213 SPATA31A1Q5TZJ5 1347 aa14.7□□□□□ -0.06
SHMT2-218ENST00000555213 RALBP1Q15311 655 aa14.7□□□□□ -0.06
SHMT2-218ENST00000555213 NLRP2Q9NX02 1062 aa14.7□□□□□ -0.06
SHMT2-218ENST00000555213 USP35Q9P2H5 1018 aa14.7□□□□□ -0.06
SHMT2-218ENST00000555213 GLI3P10071 1580 aa14.69□□□□□ -0.06
SHMT2-218ENST00000555213 A0A0G2JS52 829 aa14.69□□□□□ -0.06
SHMT2-218ENST00000555213 MYT1Q01538 1121 aa14.69□□□□□ -0.06
SHMT2-218ENST00000555213 HSP90AB2PQ58FF8 381 aa14.69□□□□□ -0.06
SHMT2-218ENST00000555213 TCP11L2Q8N4U5 519 aa14.69□□□□□ -0.06
SHMT2-218ENST00000555213 THRAP3Q9Y2W1 955 aaKnown RBP14.69□□□□□ -0.06
SHMT2-218ENST00000555213 MAP2P11137 1827 aaKnown RBP14.69□□□□□ -0.06
SHMT2-218ENST00000555213 MTHFSP49914 203 aa14.68□□□□□ -0.06
SHMT2-218ENST00000555213 CFAP53Q96M91 514 aa14.68□□□□□ -0.06
SHMT2-218ENST00000555213 CARD10Q9BWT7 1032 aa14.68□□□□□ -0.06
SHMT2-218ENST00000555213 RGPD5Q99666 1765 aa14.68□□□□□ -0.06
SHMT2-218ENST00000555213 PPP2R1AP30153 589 aa14.66□□□□□ -0.06
SHMT2-218ENST00000555213 FAM98CQ17RN3 349 aaKnown RBP14.66□□□□□ -0.06
SHMT2-218ENST00000555213 BARGINQ6ZT62 677 aa14.66□□□□□ -0.06
SHMT2-218ENST00000555213 CDCA7Q9BWT1 371 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-218ENST00000555213 RGS12O14924 1447 aa14.66□□□□□ -0.06
SHMT2-218ENST00000555213 EIF4A2Q14240 407 aaKnown RBP14.64□□□□□ -0.07
SHMT2-218ENST00000555213 UPF1Q92900 1129 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHMT2-218ENST00000555213 MYBBP1AQ9BQG0 1328 aaKnown RBP14.64□□□□□ -0.07
SHMT2-218ENST00000555213 THSD7AQ9UPZ6 1657 aa14.63□□□□□ -0.07
SHMT2-218ENST00000555213 SEPT12Q8IYM1 358 aa14.63□□□□□ -0.07
SHMT2-218ENST00000555213 ONECUT3O60422 494 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-218ENST00000555213 DIAPH1O60610 1272 aaKnown RBP14.62□□□□□ -0.07
SHMT2-218ENST00000555213 IL2RBP14784 551 aa14.62□□□□□ -0.07
SHMT2-218ENST00000555213 NBPF6Q5VWK0 638 aa14.61□□□□□ -0.07
SHMT2-218ENST00000555213 RAPGEF4Q8WZA2 1011 aa14.61□□□□□ -0.07
SHMT2-218ENST00000555213 NBPF4Q96M43 638 aa14.61□□□□□ -0.07
SHMT2-218ENST00000555213 COL3A1P02461 1466 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-218ENST00000555213 WNK3Q9BYP7 1800 aa14.61□□□□□ -0.07
SHMT2-218ENST00000555213 DISP2A7MBM2 1401 aa14.6□□□□□ -0.07
SHMT2-218ENST00000555213 NUDCQ9Y266 331 aa14.6□□□□□ -0.07
SHMT2-218ENST00000555213 IGSF1Q8N6C5 1336 aa14.6□□□□□ -0.07
SHMT2-218ENST00000555213 NCAPD2Q15021 1401 aa14.59□□□□□ -0.07
SHMT2-218ENST00000555213 PARP4Q9UKK3 1724 aaKnown RBP14.59□□□□□ -0.07
SHMT2-218ENST00000555213 IL13P35225 146 aa14.59□□□□□ -0.07
SHMT2-218ENST00000555213 USHBP1Q8N6Y0 703 aa14.59□□□□□ -0.07
SHMT2-218ENST00000555213 EYA1Q99502 592 aa14.59□□□□□ -0.07
SHMT2-218ENST00000555213 LRRC37A3O60309 1634 aa14.59□□□□□ -0.07
SHMT2-218ENST00000555213 TNS2Q63HR2 1409 aa14.58□□□□□ -0.07
SHMT2-218ENST00000555213 TATP17735 454 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-218ENST00000555213 PDE3BQ13370 1112 aa14.58□□□□□ -0.08
SHMT2-218ENST00000555213 DDB1Q16531 1140 aa14.58□□□□□ -0.08
SHMT2-218ENST00000555213 PNISRQ8TF01 805 aaKnown RBP14.58□□□□□ -0.08
SHMT2-218ENST00000555213 PLEKHG2Q9H7P9 1386 aa14.58□□□□□ -0.08
SHMT2-218ENST00000555213 OVOS2A0A0G2JMS6 1433 aa14.58□□□□□ -0.08
SHMT2-218ENST00000555213 U2SURPO15042 1029 aaKnown RBP14.57□□□□□ -0.08
SHMT2-218ENST00000555213 KRT27Q7Z3Y8 459 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms