RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 WDR63Q8IWG1 891 aa10.31□□□□□ -0.76
YBX3-208ENST00000540447 MPHOSPH9Q99550 1183 aa10.31□□□□□ -0.76
YBX3-208ENST00000540447 KIF4BQ2VIQ3 1234 aa10.3□□□□□ -0.76
YBX3-208ENST00000540447 MSL1Q68DK7 614 aa10.3□□□□□ -0.76
YBX3-208ENST00000540447 PLEKHD1A6NEE1 506 aa10.3□□□□□ -0.76
YBX3-208ENST00000540447 GOLGA6L9A6NEM1 432 aa10.3□□□□□ -0.76
YBX3-208ENST00000540447 KIF5CO60282 957 aa10.3□□□□□ -0.76
YBX3-208ENST00000540447 CCDC171Q6TFL3 1326 aa10.3□□□□□ -0.76
YBX3-208ENST00000540447 ZNF396Q96N95 335 aaPredicted RBP10.3□□□□□ -0.76
YBX3-208ENST00000540447 KIF5BP33176 963 aa10.3□□□□□ -0.76
YBX3-208ENST00000540447 GIGYF2Q6Y7W6 1299 aaKnown RBP10.3□□□□□ -0.76
YBX3-208ENST00000540447 KLHL40Q2TBA0 621 aa10.3□□□□□ -0.76
YBX3-208ENST00000540447 PSMD1Q99460 953 aa10.3□□□□□ -0.76
YBX3-208ENST00000540447 EPB41L2O43491 1005 aaKnown RBP10.3□□□□□ -0.76
YBX3-208ENST00000540447 TMX4Q9H1E5 349 aaPredicted RBP10.3□□□□□ -0.76
YBX3-208ENST00000540447 ATP2C2O75185 946 aa10.29□□□□□ -0.76
YBX3-208ENST00000540447 SSFA2P28290 1259 aa10.29□□□□□ -0.76
YBX3-208ENST00000540447 CFDP1Q9UEE9 299 aaPredicted RBP10.29□□□□□ -0.76
YBX3-208ENST00000540447 ZSCAN23Q3MJ62 389 aa10.29□□□□□ -0.76
YBX3-208ENST00000540447 SPECC1LQ69YQ0 1117 aa10.29□□□□□ -0.76
YBX3-208ENST00000540447 DAAM2Q86T65 1068 aa10.29□□□□□ -0.76
YBX3-208ENST00000540447 NBPF11Q86T75 865 aa10.29□□□□□ -0.76
YBX3-208ENST00000540447 FAM177BA6PVY3 158 aa10.29□□□□□ -0.76
YBX3-208ENST00000540447 SMTNL1A8MU46 457 aa10.29□□□□□ -0.76
YBX3-208ENST00000540447 KANK4Q5T7N3 995 aaPredicted RBP10.29□□□□□ -0.76
YBX3-208ENST00000540447 PIP4K2AP48426 406 aaPredicted RBP10.29□□□□□ -0.76
YBX3-208ENST00000540447 CEBPZQ03701 1054 aaKnown RBP10.29□□□□□ -0.76
YBX3-208ENST00000540447 CDCA7LQ96GN5 454 aa10.29□□□□□ -0.76
YBX3-208ENST00000540447 CEP63Q96MT8 703 aa10.29□□□□□ -0.76
YBX3-208ENST00000540447 FAM114A1Q8IWE2 563 aa10.28□□□□□ -0.76
YBX3-208ENST00000540447 SMC1AQ14683 1233 aaKnown RBP10.28□□□□□ -0.76
YBX3-208ENST00000540447 DZIP1Q86YF9 867 aaKnown RBP10.28□□□□□ -0.76
YBX3-208ENST00000540447 ERC1Q8IUD2 1116 aa10.28□□□□□ -0.76
YBX3-208ENST00000540447 VPS18Q9P253 973 aa10.28□□□□□ -0.76
YBX3-208ENST00000540447 SLU7O95391 586 aaKnown RBP10.28□□□□□ -0.76
YBX3-208ENST00000540447 DACH1Q9UI36 760 aa10.28□□□□□ -0.76
YBX3-208ENST00000540447 SPAG9O60271 1321 aaKnown RBP10.28□□□□□ -0.76
YBX3-208ENST00000540447 PSMA5P28066 241 aa10.28□□□□□ -0.76
YBX3-208ENST00000540447 GTF3C6Q969F1 213 aa10.28□□□□□ -0.76
YBX3-208ENST00000540447 MAGEC2Q9UBF1 373 aaPredicted RBP10.28□□□□□ -0.76
YBX3-208ENST00000540447 MCM6Q14566 821 aa10.28□□□□□ -0.76
YBX3-208ENST00000540447 PANK3Q9H999 370 aa10.28□□□□□ -0.76
YBX3-208ENST00000540447 GCKP35557 465 aa10.27□□□□□ -0.76
YBX3-208ENST00000540447 GSDMDP57764 484 aa10.27□□□□□ -0.77
YBX3-208ENST00000540447 SAFBQ15424 915 aaKnown RBP eCLIP10.27□□□□□ -0.77
YBX3-208ENST00000540447 LRSAM1Q6UWE0 723 aa10.27□□□□□ -0.77
YBX3-208ENST00000540447 LUC7LQ9NQ29 371 aaKnown RBP10.27□□□□□ -0.77
YBX3-208ENST00000540447 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.27□□□□□ -0.77
YBX3-208ENST00000540447 CCDC121Q6ZUS5 278 aa10.27□□□□□ -0.77
YBX3-208ENST00000540447 MYRIPQ8NFW9 859 aa10.27□□□□□ -0.77
YBX3-208ENST00000540447 HYPKQ9NX55 129 aa10.27□□□□□ -0.77
YBX3-208ENST00000540447 ELL2O00472 640 aaPredicted RBP10.27□□□□□ -0.77
YBX3-208ENST00000540447 KIF4AO95239 1232 aa10.27□□□□□ -0.77
YBX3-208ENST00000540447 STK38Q15208 465 aa10.27□□□□□ -0.77
YBX3-208ENST00000540447 SPATA32Q96LK8 384 aa10.27□□□□□ -0.77
YBX3-208ENST00000540447 PKD2Q13563 968 aa10.27□□□□□ -0.77
YBX3-208ENST00000540447 CAMK4Q16566 473 aa10.27□□□□□ -0.77
YBX3-208ENST00000540447 TCHPQ9BT92 498 aa10.27□□□□□ -0.77
YBX3-208ENST00000540447 ROCK1Q13464 1354 aa10.26□□□□□ -0.77
YBX3-208ENST00000540447 CFAP100Q494V2 611 aa10.26□□□□□ -0.77
YBX3-208ENST00000540447 PDE3AQ14432 1141 aa10.26□□□□□ -0.77
YBX3-208ENST00000540447 CCDC114Q96M63 670 aa10.26□□□□□ -0.77
YBX3-208ENST00000540447 RAI14Q9P0K7 980 aa10.26□□□□□ -0.77
YBX3-208ENST00000540447 CCDC160A6NGH7 325 aa10.26□□□□□ -0.77
YBX3-208ENST00000540447 EPS15P42566 896 aa10.26□□□□□ -0.77
YBX3-208ENST00000540447 NBPF8Q3BBV2 869 aa10.26□□□□□ -0.77
YBX3-208ENST00000540447 API5Q9BZZ5 524 aaKnown RBP10.26□□□□□ -0.77
YBX3-208ENST00000540447 CCDC113Q9H0I3 377 aa10.26□□□□□ -0.77
YBX3-208ENST00000540447 FMN1Q68DA7 1419 aa10.26□□□□□ -0.77
YBX3-208ENST00000540447 RBBP5Q15291 538 aaKnown RBP10.25□□□□□ -0.77
YBX3-208ENST00000540447 MIPOL1Q8TD10 442 aa10.25□□□□□ -0.77
YBX3-208ENST00000540447 EFCC1Q9HA90 598 aa10.25□□□□□ -0.77
YBX3-208ENST00000540447 RBM27Q9P2N5 1060 aaKnown RBP10.25□□□□□ -0.77
YBX3-208ENST00000540447 ARHGAP35Q9NRY4 1499 aa10.25□□□□□ -0.77
YBX3-208ENST00000540447 TXLNAP40222 546 aa10.25□□□□□ -0.77
YBX3-208ENST00000540447 CCDC6Q16204 474 aa10.25□□□□□ -0.77
YBX3-208ENST00000540447 CCDC7Q96M83 1385 aa10.25□□□□□ -0.77
YBX3-208ENST00000540447 ANKRD30AQ9BXX3 1397 aa10.25□□□□□ -0.77
YBX3-208ENST00000540447 ME1P48163 572 aa10.25□□□□□ -0.77
YBX3-208ENST00000540447 NOL7Q9UMY1 257 aaKnown RBP10.25□□□□□ -0.77
YBX3-208ENST00000540447 POTEDQ86YR6 584 aa10.25□□□□□ -0.77
YBX3-208ENST00000540447 CEP112Q8N8E3 955 aa10.25□□□□□ -0.77
YBX3-208ENST00000540447 IFFO1Q0D2I5 559 aa10.25□□□□□ -0.77
YBX3-208ENST00000540447 NINLQ9Y2I6 1382 aa10.24□□□□□ -0.77
YBX3-208ENST00000540447 BAG4O95429 457 aaKnown RBP10.24□□□□□ -0.77
YBX3-208ENST00000540447 TTC12Q9H892 705 aaPredicted RBP10.24□□□□□ -0.77
YBX3-208ENST00000540447 SPATS2LQ9NUQ6 558 aaKnown RBP10.24□□□□□ -0.77
YBX3-208ENST00000540447 BRD4O60885 1362 aaPredicted RBP10.24□□□□□ -0.77
YBX3-208ENST00000540447 PPP2R5AQ15172 486 aa10.24□□□□□ -0.77
YBX3-208ENST00000540447 LARP1BQ659C4 914 aaKnown RBP10.24□□□□□ -0.77
YBX3-208ENST00000540447 ATRIPQ8WXE1 791 aa10.24□□□□□ -0.77
YBX3-208ENST00000540447 ERC2O15083 957 aa10.23□□□□□ -0.77
YBX3-208ENST00000540447 IFIT2P09913 472 aaKnown RBP10.23□□□□□ -0.77
YBX3-208ENST00000540447 SEPT14Q6ZU15 432 aa10.23□□□□□ -0.77
YBX3-208ENST00000540447 HDGFL2Q7Z4V5 671 aaPredicted RBP10.23□□□□□ -0.77
YBX3-208ENST00000540447 ST20-MTHFSA0A0A6YYL1 179 aa10.23□□□□□ -0.77
YBX3-208ENST00000540447 KIF3CO14782 793 aa10.23□□□□□ -0.77
YBX3-208ENST00000540447 ZFYVE27Q5T4F4 411 aa10.23□□□□□ -0.77
YBX3-208ENST00000540447 HSF2BPO75031 334 aa10.23□□□□□ -0.77
YBX3-208ENST00000540447 ZFYP08048 801 aaPredicted RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms