RNA–Protein interactions for RNA: ENST00000539512.1

TRAV11-201, Transcript of T cell receptor alpha variable 11 (pseudogene), humanhuman

BASIC

Gene TRAV11, Length 339 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV11-201ENST00000539512 MAFBQ9Y5Q3 323 aaPredicted RBP12.37□□□□□ -0.43
TRAV11-201ENST00000539512 CFAP70Q5T0N1 1121 aa12.36□□□□□ -0.43
TRAV11-201ENST00000539512 TRIM52Q96A61 297 aa12.36□□□□□ -0.43
TRAV11-201ENST00000539512 USP17L5A8MUK1 530 aa12.35□□□□□ -0.43
TRAV11-201ENST00000539512 RAB15P59190 212 aa12.35□□□□□ -0.43
TRAV11-201ENST00000539512 MAP7D1Q3KQU3 841 aa12.35□□□□□ -0.43
TRAV11-201ENST00000539512 CCDC125Q86Z20 511 aa12.35□□□□□ -0.43
TRAV11-201ENST00000539512 PLPP7Q8NBV4 271 aa12.35□□□□□ -0.43
TRAV11-201ENST00000539512 DOLKQ9UPQ8 538 aa12.35□□□□□ -0.43
TRAV11-201ENST00000539512 USP17L3A6NCW0 530 aa12.34□□□□□ -0.43
TRAV11-201ENST00000539512 USP17L4A6NCW7 530 aa12.34□□□□□ -0.43
TRAV11-201ENST00000539512 GIGYF1O75420 1035 aaPredicted RBP12.34□□□□□ -0.43
TRAV11-201ENST00000539512 USP17L2Q6R6M4 530 aa12.34□□□□□ -0.43
TRAV11-201ENST00000539512 USP17L1Q7RTZ2 530 aa12.34□□□□□ -0.43
TRAV11-201ENST00000539512 SEPT12Q8IYM1 358 aa12.34□□□□□ -0.43
TRAV11-201ENST00000539512 KCTD15Q96SI1 283 aaPredicted RBP12.34□□□□□ -0.43
TRAV11-201ENST00000539512 ESF1Q9H501 851 aaKnown RBP12.34□□□□□ -0.43
TRAV11-201ENST00000539512 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.33□□□□□ -0.44
TRAV11-201ENST00000539512 ZNF697Q5TEC3 545 aa12.33□□□□□ -0.44
TRAV11-201ENST00000539512 SPRYD7Q5W111 196 aa12.33□□□□□ -0.44
TRAV11-201ENST00000539512 PRKD2Q9BZL6 878 aa12.33□□□□□ -0.44
TRAV11-201ENST00000539512 MAP4K5Q9Y4K4 846 aa12.33□□□□□ -0.44
TRAV11-201ENST00000539512 WNT7AO00755 349 aa12.32□□□□□ -0.44
TRAV11-201ENST00000539512 LZTS3O60299 673 aaPredicted RBP12.32□□□□□ -0.44
TRAV11-201ENST00000539512 EML3Q32P44 896 aa12.32□□□□□ -0.44
TRAV11-201ENST00000539512 VRTNQ9H8Y1 702 aa12.32□□□□□ -0.44
TRAV11-201ENST00000539512 DEPDC4Q8N2C3 294 aa12.31□□□□□ -0.44
TRAV11-201ENST00000539512 FOXC1Q12948 553 aa12.3□□□□□ -0.44
TRAV11-201ENST00000539512 OXLD1Q5BKU9 147 aa12.3□□□□□ -0.44
TRAV11-201ENST00000539512 ZNF598Q86UK7 904 aaKnown RBP12.3□□□□□ -0.44
TRAV11-201ENST00000539512 PLEKHM2Q8IWE5 1019 aa12.3□□□□□ -0.44
TRAV11-201ENST00000539512 PCDHB11Q9Y5F2 797 aa12.3□□□□□ -0.44
TRAV11-201ENST00000539512 V9GY48 417 aaPredicted RBP12.3□□□□□ -0.44
TRAV11-201ENST00000539512 NCOA4Q13772 614 aa12.29□□□□□ -0.44
TRAV11-201ENST00000539512 PHTF2Q8N3S3 785 aa12.29□□□□□ -0.44
TRAV11-201ENST00000539512 SIRT1Q96EB6 747 aa12.29□□□□□ -0.44
TRAV11-201ENST00000539512 MRGPRX2Q96LB1 330 aa12.29□□□□□ -0.44
TRAV11-201ENST00000539512 TLL2Q9Y6L7 1015 aa12.29□□□□□ -0.44
TRAV11-201ENST00000539512 CSB-PGBD3P0DP91 1061 aa12.28□□□□□ -0.44
TRAV11-201ENST00000539512 FSHRP23945 695 aa12.28□□□□□ -0.44
TRAV11-201ENST00000539512 DHX9Q08211 1270 aaKnown RBP12.28□□□□□ -0.44
TRAV11-201ENST00000539512 PDE4CQ08493 712 aa12.28□□□□□ -0.44
TRAV11-201ENST00000539512 CDCA8Q53HL2 280 aa12.28□□□□□ -0.44
TRAV11-201ENST00000539512 TRIM50Q86XT4 487 aa12.28□□□□□ -0.44
TRAV11-201ENST00000539512 NOD1Q9Y239 953 aa12.28□□□□□ -0.44
TRAV11-201ENST00000539512 ESPNB1AK53 854 aa12.27□□□□□ -0.45
TRAV11-201ENST00000539512 EMID1Q96A84 441 aaPredicted RBP12.27□□□□□ -0.45
TRAV11-201ENST00000539512 ATP5J2-PTCD1G3V325 749 aa12.26□□□□□ -0.45
TRAV11-201ENST00000539512 MYCP01106 439 aaPredicted RBP12.26□□□□□ -0.45
TRAV11-201ENST00000539512 PDIA4P13667 645 aaKnown RBP12.26□□□□□ -0.45
TRAV11-201ENST00000539512 LARP1Q6PKG0 1096 aaKnown RBP12.26□□□□□ -0.45
TRAV11-201ENST00000539512 CDK15Q96Q40 435 aa12.26□□□□□ -0.45
TRAV11-201ENST00000539512 MKRN1Q9UHC7 482 aaKnown RBP12.26□□□□□ -0.45
TRAV11-201ENST00000539512 WASF2Q9Y6W5 498 aa12.26□□□□□ -0.45
TRAV11-201ENST00000539512 ADH1CP00326 375 aa12.25□□□□□ -0.45
TRAV11-201ENST00000539512 USP4Q13107 963 aa12.25□□□□□ -0.45
TRAV11-201ENST00000539512 INTS6LQ5JSJ4 861 aaKnown RBP12.25□□□□□ -0.45
TRAV11-201ENST00000539512 MPNDQ8N594 471 aa12.25□□□□□ -0.45
TRAV11-201ENST00000539512 CCDC85AQ96PX6 553 aaPredicted RBP12.25□□□□□ -0.45
TRAV11-201ENST00000539512 ALDH1A1P00352 501 aa12.24□□□□□ -0.45
TRAV11-201ENST00000539512 ATP1A2P50993 1020 aa12.24□□□□□ -0.45
TRAV11-201ENST00000539512 NR5A1Q13285 461 aa12.24□□□□□ -0.45
TRAV11-201ENST00000539512 RBM19Q9Y4C8 960 aaKnown RBP12.24□□□□□ -0.45
TRAV11-201ENST00000539512 TTC24A2A3L6 582 aaPredicted RBP12.23□□□□□ -0.45
TRAV11-201ENST00000539512 RASA1P20936 1047 aa12.23□□□□□ -0.45
TRAV11-201ENST00000539512 PSME1Q06323 249 aa12.23□□□□□ -0.45
TRAV11-201ENST00000539512 SIAH2O43255 324 aa12.22□□□□□ -0.45
TRAV11-201ENST00000539512 CYP4X1Q8N118 509 aa12.22□□□□□ -0.45
TRAV11-201ENST00000539512 CHIC2Q9UKJ5 165 aa12.22□□□□□ -0.45
TRAV11-201ENST00000539512 ERVH48-1M5A8F1 160 aa12.21□□□□□ -0.45
TRAV11-201ENST00000539512 TRAF7Q6Q0C0 670 aa12.21□□□□□ -0.45
TRAV11-201ENST00000539512 CCDC116Q8IYX3 515 aa12.21□□□□□ -0.45
TRAV11-201ENST00000539512 RETREG2Q8NC44 543 aa12.21□□□□□ -0.45
TRAV11-201ENST00000539512 ATG7O95352 703 aa12.2□□□□□ -0.46
TRAV11-201ENST00000539512 TSGA10IPQ3SY00 556 aa12.2□□□□□ -0.46
TRAV11-201ENST00000539512 KANK4Q5T7N3 995 aaPredicted RBP12.2□□□□□ -0.46
TRAV11-201ENST00000539512 SNIP1Q8TAD8 396 aaKnown RBP12.2□□□□□ -0.46
TRAV11-201ENST00000539512 PGPEP1Q9NXJ5 209 aa12.2□□□□□ -0.46
TRAV11-201ENST00000539512 DNAAF2Q9NVR5 837 aaKnown RBP12.19□□□□□ -0.46
TRAV11-201ENST00000539512 GRM5P41594 1212 aa12.18□□□□□ -0.46
TRAV11-201ENST00000539512 GTF2IP78347 998 aa12.18□□□□□ -0.46
TRAV11-201ENST00000539512 OGFOD1Q8N543 542 aa12.18□□□□□ -0.46
TRAV11-201ENST00000539512 CDCA7Q9BWT1 371 aaPredicted RBP12.18□□□□□ -0.46
TRAV11-201ENST00000539512 FAM196BA6NMK8 535 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L15C9J2P7 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L10C9JJH3 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L13C9JLJ4 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L12C9JPN9 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L11C9JVI0 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L21D6R901 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L18D6R9N7 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L22D6RA61 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L17D6RBQ6 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L19D6RCP7 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L20D6RJB6 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 SRPK2P78362 688 aaKnown RBP12.17□□□□□ -0.46
TRAV11-201ENST00000539512 USP17L24Q0WX57 530 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 CYLDQ9NQC7 956 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 PKD2L1Q9P0L9 805 aa12.17□□□□□ -0.46
TRAV11-201ENST00000539512 NOVA2Q9UNW9 492 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms