RNA–Protein interactions for RNA: ENST00000539512.1

TRAV11-201, Transcript of T cell receptor alpha variable 11 (pseudogene), humanhuman

BASIC

Gene TRAV11, Length 339 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV11-201ENST00000539512 AEBP2Q6ZN18 517 aaPredicted RBP30.58■■■□□ 2.49
TRAV11-201ENST00000539512 CHIC1Q5VXU3 224 aa30.4■■■□□ 2.46
TRAV11-201ENST00000539512 PHF23Q9BUL5 403 aaPredicted RBP26.68■■□□□ 1.86
TRAV11-201ENST00000539512 SENP3Q9H4L4 574 aaPredicted RBP26.09■■□□□ 1.77
TRAV11-201ENST00000539512 PLPPR3Q6T4P5 718 aa24.97■■□□□ 1.59
TRAV11-201ENST00000539512 FOXD1Q16676 465 aa24.03■■□□□ 1.44
TRAV11-201ENST00000539512 ADRA2BP18089 450 aa23.48■■□□□ 1.35
TRAV11-201ENST00000539512 PPP6R1Q9UPN7 881 aa23.4■■□□□ 1.34
TRAV11-201ENST00000539512 PIAS4Q8N2W9 510 aaPredicted RBP22.9■■□□□ 1.26
TRAV11-201ENST00000539512 MSH5O43196 834 aa22.14■■□□□ 1.13
TRAV11-201ENST00000539512 PPP4R3CPQ6ZMV5 832 aa22.01■■□□□ 1.11
TRAV11-201ENST00000539512 KCNA4P22459 653 aa21.94■■□□□ 1.1
TRAV11-201ENST00000539512 NCBP3Q53F19 620 aaKnown RBP21.69■■□□□ 1.06
TRAV11-201ENST00000539512 SCAF1Q9H7N4 1312 aaKnown RBP21.67■■□□□ 1.06
TRAV11-201ENST00000539512 CNKSR2Q8WXI2 1034 aa21.33■■□□□ 1.01
TRAV11-201ENST00000539512 NPM3O75607 178 aaKnown RBP21.2■□□□□ 0.98
TRAV11-201ENST00000539512 MAPK8IP2Q13387 824 aaPredicted RBP21.14■□□□□ 0.97
TRAV11-201ENST00000539512 SLC4A1APQ9BWU0 796 aaKnown RBP21.08■□□□□ 0.97
TRAV11-201ENST00000539512 EHMT2Q96KQ7 1210 aa20.99■□□□□ 0.95
TRAV11-201ENST00000539512 DMRT2Q9Y5R5 561 aa20.83■□□□□ 0.93
TRAV11-201ENST00000539512 RNF216Q9NWF9 866 aaPredicted RBP20.78■□□□□ 0.92
TRAV11-201ENST00000539512 HOXD11P31277 338 aaPredicted RBP20.52■□□□□ 0.88
TRAV11-201ENST00000539512 DNAJC5BQ9UF47 199 aa20.44■□□□□ 0.86
TRAV11-201ENST00000539512 CSRNP3Q8WYN3 585 aa20.39■□□□□ 0.85
TRAV11-201ENST00000539512 FOXD4L1Q9NU39 408 aa20.15■□□□□ 0.82
TRAV11-201ENST00000539512 ZBTB22O15209 634 aa20.11■□□□□ 0.81
TRAV11-201ENST00000539512 DCAF8L1A6NGE4 600 aa20.08■□□□□ 0.81
TRAV11-201ENST00000539512 SLC4A2P04920 1241 aa19.85■□□□□ 0.77
TRAV11-201ENST00000539512 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.74■□□□□ 0.75
TRAV11-201ENST00000539512 MYCNP04198 464 aaPredicted RBP19.68■□□□□ 0.74
TRAV11-201ENST00000539512 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.41■□□□□ 0.7
TRAV11-201ENST00000539512 HNRNPUL2Q1KMD3 747 aaKnown RBP19.41■□□□□ 0.7
TRAV11-201ENST00000539512 ATXN8OSP0DMR3 200 aa19.4■□□□□ 0.7
TRAV11-201ENST00000539512 SAMD1Q6SPF0 538 aaPredicted RBP19.32■□□□□ 0.68
TRAV11-201ENST00000539512 POTEDQ86YR6 584 aa19.3■□□□□ 0.68
TRAV11-201ENST00000539512 U3KPZ7 1027 aaPredicted RBP19.3■□□□□ 0.68
TRAV11-201ENST00000539512 APLP2Q06481 763 aa19.16■□□□□ 0.66
TRAV11-201ENST00000539512 ATF5Q9Y2D1 282 aaPredicted RBP18.95■□□□□ 0.62
TRAV11-201ENST00000539512 RNF39Q9H2S5 420 aa18.91■□□□□ 0.62
TRAV11-201ENST00000539512 C1QBPQ07021 282 aaKnown RBP18.79■□□□□ 0.6
TRAV11-201ENST00000539512 ZNF219Q9P2Y4 722 aaPredicted RBP18.75■□□□□ 0.59
TRAV11-201ENST00000539512 CAPN15O75808 1086 aa18.69■□□□□ 0.58
TRAV11-201ENST00000539512 TRHP20396 242 aaPredicted RBP18.69■□□□□ 0.58
TRAV11-201ENST00000539512 SPINK5Q9NQ38 1064 aaPredicted RBP18.64■□□□□ 0.57
TRAV11-201ENST00000539512 FKBP8Q14318 412 aa18.54■□□□□ 0.56
TRAV11-201ENST00000539512 POLA2Q14181 598 aa18.43■□□□□ 0.54
TRAV11-201ENST00000539512 FBLN2P98095 1184 aa18.38■□□□□ 0.53
TRAV11-201ENST00000539512 ABCB7O75027 752 aa18.32■□□□□ 0.52
TRAV11-201ENST00000539512 ZBTB12Q9Y330 459 aaPredicted RBP18.29■□□□□ 0.52
TRAV11-201ENST00000539512 CACNB1Q02641 598 aaPredicted RBP18.23■□□□□ 0.51
TRAV11-201ENST00000539512 MKRN4PQ13434 485 aaPredicted RBP18.16■□□□□ 0.5
TRAV11-201ENST00000539512 DSG3P32926 999 aa18.14■□□□□ 0.49
TRAV11-201ENST00000539512 SPDYE4A6NLX3 237 aa18.12■□□□□ 0.49
TRAV11-201ENST00000539512 FBXO3Q9UK99 471 aa17.86■□□□□ 0.45
TRAV11-201ENST00000539512 OSCARQ8IYS5 282 aa17.78■□□□□ 0.44
TRAV11-201ENST00000539512 ZNF692Q9BU19 519 aaPredicted RBP17.76■□□□□ 0.43
TRAV11-201ENST00000539512 SPDYE2BA6NHP3 402 aa17.74■□□□□ 0.43
TRAV11-201ENST00000539512 SPDYE6P0CI01 402 aa17.74■□□□□ 0.43
TRAV11-201ENST00000539512 SPDYE2Q495Y8 402 aa17.74■□□□□ 0.43
TRAV11-201ENST00000539512 PROM2Q8N271 834 aa17.71■□□□□ 0.43
TRAV11-201ENST00000539512 AMER1Q5JTC6 1135 aaPredicted RBP17.7■□□□□ 0.42
TRAV11-201ENST00000539512 SSUH2Q9Y2M2 353 aa17.56■□□□□ 0.4
TRAV11-201ENST00000539512 RTN4Q9NQC3 1192 aaKnown RBP17.54■□□□□ 0.4
TRAV11-201ENST00000539512 VASPP50552 380 aaPredicted RBP17.51■□□□□ 0.39
TRAV11-201ENST00000539512 PABPN1Q86U42 306 aaKnown RBP eCLIP17.51■□□□□ 0.39
TRAV11-201ENST00000539512 RBM42Q9BTD8 480 aaKnown RBP17.43■□□□□ 0.38
TRAV11-201ENST00000539512 STAG3Q9UJ98 1225 aa17.4■□□□□ 0.38
TRAV11-201ENST00000539512 PLCD3Q8N3E9 789 aa17.26■□□□□ 0.35
TRAV11-201ENST00000539512 KLHL34Q8N239 644 aa17.24■□□□□ 0.35
TRAV11-201ENST00000539512 AKT1S1Q96B36 256 aa17.24■□□□□ 0.35
TRAV11-201ENST00000539512 PLEKHG5O94827 1062 aa17.21■□□□□ 0.35
TRAV11-201ENST00000539512 IFNLR1Q8IU57 520 aaPredicted RBP17.21■□□□□ 0.35
TRAV11-201ENST00000539512 MIER1Q8N108 512 aa17.19■□□□□ 0.34
TRAV11-201ENST00000539512 SPDYE1Q8NFV5 336 aaPredicted RBP17.16■□□□□ 0.34
TRAV11-201ENST00000539512 SPOCK2Q92563 424 aa17.07■□□□□ 0.32
TRAV11-201ENST00000539512 CLEC11AQ9Y240 323 aa17.07■□□□□ 0.32
TRAV11-201ENST00000539512 ZBTB47Q9UFB7 747 aaPredicted RBP17.06■□□□□ 0.32
TRAV11-201ENST00000539512 REM2Q8IYK8 340 aaPredicted RBP17.03■□□□□ 0.32
TRAV11-201ENST00000539512 PRR29P0C7W0 189 aa16.97■□□□□ 0.31
TRAV11-201ENST00000539512 DCAF8L2P0C7V8 631 aa16.85■□□□□ 0.29
TRAV11-201ENST00000539512 PITPNM1O00562 1244 aa16.83■□□□□ 0.28
TRAV11-201ENST00000539512 PKD2Q13563 968 aa16.78■□□□□ 0.28
TRAV11-201ENST00000539512 CIZ1Q9ULV3 898 aaPredicted RBP16.77■□□□□ 0.28
TRAV11-201ENST00000539512 ECM2O94769 699 aaPredicted RBP16.76■□□□□ 0.27
TRAV11-201ENST00000539512 CREBZFQ9NS37 354 aa16.71■□□□□ 0.27
TRAV11-201ENST00000539512 GSE1Q14687 1217 aa16.65■□□□□ 0.26
TRAV11-201ENST00000539512 SLC24A1O60721 1099 aa16.64■□□□□ 0.25
TRAV11-201ENST00000539512 NPM1P06748 294 aaKnown RBP eCLIP16.63■□□□□ 0.25
TRAV11-201ENST00000539512 TRIM41Q8WV44 630 aa16.62■□□□□ 0.25
TRAV11-201ENST00000539512 DCAF8Q5TAQ9 597 aa16.59■□□□□ 0.25
TRAV11-201ENST00000539512 FAM212AQ96EL1 285 aa16.59■□□□□ 0.25
TRAV11-201ENST00000539512 NUBP1P53384 320 aa16.56■□□□□ 0.24
TRAV11-201ENST00000539512 MNX1P50219 401 aaPredicted RBP16.52■□□□□ 0.24
TRAV11-201ENST00000539512 CHADLQ6NUI6 762 aa16.5■□□□□ 0.23
TRAV11-201ENST00000539512 RGL2O15211 777 aa16.47■□□□□ 0.23
TRAV11-201ENST00000539512 PRKAR2AP13861 404 aaKnown RBP16.47■□□□□ 0.23
TRAV11-201ENST00000539512 CHRDL2Q6WN34 429 aa16.46■□□□□ 0.23
TRAV11-201ENST00000539512 FARP1Q9Y4F1 1045 aaPredicted RBP16.42■□□□□ 0.22
TRAV11-201ENST00000539512 RASEFQ8IZ41 740 aa16.41■□□□□ 0.22
TRAV11-201ENST00000539512 FXR2P51116 673 aaKnown RBP eCLIP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms