RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 SLIT3O75094 1523 aa11.37□□□□□ -0.59
CCL28-204ENST00000514421 AMPHP49418 695 aa11.37□□□□□ -0.59
CCL28-204ENST00000514421 CCDC7Q96M83 1385 aa11.37□□□□□ -0.59
CCL28-204ENST00000514421 SPATA31A1Q5TZJ5 1347 aa11.36□□□□□ -0.59
CCL28-204ENST00000514421 PER1O15534 1290 aaPredicted RBP11.36□□□□□ -0.59
CCL28-204ENST00000514421 CSB-PGBD3P0DP91 1061 aa11.36□□□□□ -0.59
CCL28-204ENST00000514421 FAM98CQ17RN3 349 aaKnown RBP11.36□□□□□ -0.59
CCL28-204ENST00000514421 TOM1L2Q6ZVM7 507 aa11.36□□□□□ -0.59
CCL28-204ENST00000514421 SEPT12Q8IYM1 358 aa11.36□□□□□ -0.59
CCL28-204ENST00000514421 OVOS2A0A0J9YW53 1432 aa11.35□□□□□ -0.59
CCL28-204ENST00000514421 OVOS2Q6IE36 1432 aa11.35□□□□□ -0.59
CCL28-204ENST00000514421 TCP11L2Q8N4U5 519 aa11.35□□□□□ -0.59
CCL28-204ENST00000514421 USP35Q9P2H5 1018 aa11.35□□□□□ -0.59
CCL28-204ENST00000514421 THRAP3Q9Y2W1 955 aaKnown RBP11.35□□□□□ -0.59
CCL28-204ENST00000514421 CDK12Q9NYV4 1490 aaPredicted RBP11.35□□□□□ -0.59
CCL28-204ENST00000514421 MON2Q7Z3U7 1717 aa11.35□□□□□ -0.59
CCL28-204ENST00000514421 MAP3K19Q56UN5 1328 aa11.35□□□□□ -0.59
CCL28-204ENST00000514421 WDR17Q8IZU2 1322 aa11.35□□□□□ -0.59
CCL28-204ENST00000514421 COL14A1Q05707 1796 aaKnown RBP11.34□□□□□ -0.59
CCL28-204ENST00000514421 PIK3C2AO00443 1686 aa11.34□□□□□ -0.59
CCL28-204ENST00000514421 CAMTA1Q9Y6Y1 1673 aa11.34□□□□□ -0.59
CCL28-204ENST00000514421 RRS1Q15050 365 aaKnown RBP11.34□□□□□ -0.59
CCL28-204ENST00000514421 BARGINQ6ZT62 677 aa11.34□□□□□ -0.59
CCL28-204ENST00000514421 CARD10Q9BWT7 1032 aa11.34□□□□□ -0.59
CCL28-204ENST00000514421 MARF1Q9Y4F3 1742 aaKnown RBP11.33□□□□□ -0.6
CCL28-204ENST00000514421 A0A0G2JS52 829 aa11.33□□□□□ -0.6
CCL28-204ENST00000514421 HOXC9P31274 260 aa11.33□□□□□ -0.6
CCL28-204ENST00000514421 MYT1Q01538 1121 aa11.33□□□□□ -0.6
CCL28-204ENST00000514421 AMER1Q5JTC6 1135 aaPredicted RBP11.33□□□□□ -0.6
CCL28-204ENST00000514421 MORC1Q86VD1 984 aa11.33□□□□□ -0.6
CCL28-204ENST00000514421 ANKRD24Q8TF21 1146 aa11.33□□□□□ -0.6
CCL28-204ENST00000514421 NRKQ7Z2Y5 1582 aa11.33□□□□□ -0.6
CCL28-204ENST00000514421 LTV1Q96GA3 475 aaPredicted RBP11.32□□□□□ -0.6
CCL28-204ENST00000514421 CDCA7Q9BWT1 371 aaPredicted RBP11.32□□□□□ -0.6
CCL28-204ENST00000514421 NLRP2Q9NX02 1062 aa11.32□□□□□ -0.6
CCL28-204ENST00000514421 CRYBG1Q9Y4K1 1723 aa11.32□□□□□ -0.6
CCL28-204ENST00000514421 NSD2O96028 1365 aa11.31□□□□□ -0.6
CCL28-204ENST00000514421 NFAT5O94916 1531 aa11.31□□□□□ -0.6
CCL28-204ENST00000514421 TNNT2P45379 298 aaPredicted RBP11.31□□□□□ -0.6
CCL28-204ENST00000514421 HSP90AB2PQ58FF8 381 aa11.31□□□□□ -0.6
CCL28-204ENST00000514421 KRT27Q7Z3Y8 459 aa11.31□□□□□ -0.6
CCL28-204ENST00000514421 POLKQ9UBT6 870 aa11.31□□□□□ -0.6
CCL28-204ENST00000514421 RGS12O14924 1447 aa11.31□□□□□ -0.6
CCL28-204ENST00000514421 ABCA3Q99758 1704 aa11.31□□□□□ -0.6
CCL28-204ENST00000514421 NWD2Q9ULI1 1742 aa11.31□□□□□ -0.6
CCL28-204ENST00000514421 ERBB3P21860 1342 aa11.31□□□□□ -0.6
CCL28-204ENST00000514421 COL5A2P05997 1499 aaPredicted RBP11.31□□□□□ -0.6
CCL28-204ENST00000514421 PHRF1Q9P1Y6 1649 aaKnown RBP11.31□□□□□ -0.6
CCL28-204ENST00000514421 CRB1P82279 1406 aa11.3□□□□□ -0.6
CCL28-204ENST00000514421 PPM1GO15355 546 aaPredicted RBP11.3□□□□□ -0.6
CCL28-204ENST00000514421 EMILIN1Q9Y6C2 1016 aa11.3□□□□□ -0.6
CCL28-204ENST00000514421 KIF24Q5T7B8 1368 aa11.29□□□□□ -0.6
CCL28-204ENST00000514421 DDX10Q13206 875 aaKnown RBP11.29□□□□□ -0.6
CCL28-204ENST00000514421 PDE3BQ13370 1112 aa11.29□□□□□ -0.6
CCL28-204ENST00000514421 CC2D1BQ5T0F9 858 aaKnown RBP11.29□□□□□ -0.6
CCL28-204ENST00000514421 UPF1Q92900 1129 aaKnown RBP eCLIP11.29□□□□□ -0.6
CCL28-204ENST00000514421 BLMP54132 1417 aaPredicted RBP11.28□□□□□ -0.6
CCL28-204ENST00000514421 EXOC5O00471 708 aa11.28□□□□□ -0.6
CCL28-204ENST00000514421 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.28□□□□□ -0.6
CCL28-204ENST00000514421 GLI3P10071 1580 aa11.28□□□□□ -0.6
CCL28-204ENST00000514421 RTL1A6NKG5 1358 aa11.28□□□□□ -0.6
CCL28-204ENST00000514421 MYOM1P52179 1685 aa11.27□□□□□ -0.6
CCL28-204ENST00000514421 PLCH1Q4KWH8 1693 aa11.27□□□□□ -0.6
CCL28-204ENST00000514421 COL18A1P39060 1754 aa11.27□□□□□ -0.61
CCL28-204ENST00000514421 DDB1Q16531 1140 aa11.27□□□□□ -0.61
CCL28-204ENST00000514421 NBPF6Q5VWK0 638 aa11.27□□□□□ -0.61
CCL28-204ENST00000514421 CCDC125Q86Z20 511 aa11.27□□□□□ -0.61
CCL28-204ENST00000514421 NBPF4Q96M43 638 aa11.27□□□□□ -0.61
CCL28-204ENST00000514421 INSRP06213 1382 aa11.27□□□□□ -0.61
CCL28-204ENST00000514421 FLT4P35916 1363 aa11.27□□□□□ -0.61
CCL28-204ENST00000514421 NPC1L1Q9UHC9 1359 aa11.27□□□□□ -0.61
CCL28-204ENST00000514421 LMO7Q8WWI1 1683 aa11.27□□□□□ -0.61
CCL28-204ENST00000514421 IL2RBP14784 551 aa11.26□□□□□ -0.61
CCL28-204ENST00000514421 CNGB1Q14028 1251 aaPredicted RBP11.26□□□□□ -0.61
CCL28-204ENST00000514421 FAM196AQ6ZSG2 479 aa11.26□□□□□ -0.61
CCL28-204ENST00000514421 USP54Q70EL1 1684 aa11.26□□□□□ -0.61
CCL28-204ENST00000514421 ABCC6O95255 1503 aa11.25□□□□□ -0.61
CCL28-204ENST00000514421 CCER2I3L3R5 266 aa11.25□□□□□ -0.61
CCL28-204ENST00000514421 NRAPQ86VF7 1730 aa11.25□□□□□ -0.61
CCL28-204ENST00000514421 MTHFSP49914 203 aa11.24□□□□□ -0.61
CCL28-204ENST00000514421 FAM182BQ5T319 152 aa11.24□□□□□ -0.61
CCL28-204ENST00000514421 CENPBP07199 599 aaPredicted RBP11.23□□□□□ -0.61
CCL28-204ENST00000514421 EYA1Q99502 592 aa11.23□□□□□ -0.61
CCL28-204ENST00000514421 SMG6Q86US8 1419 aaKnown RBP11.23□□□□□ -0.61
CCL28-204ENST00000514421 SF3B2Q13435 895 aaKnown RBP11.22□□□□□ -0.61
CCL28-204ENST00000514421 EIF4A2Q14240 407 aaKnown RBP11.22□□□□□ -0.61
CCL28-204ENST00000514421 USHBP1Q8N6Y0 703 aa11.22□□□□□ -0.61
CCL28-204ENST00000514421 MARCH10Q8NA82 808 aaPredicted RBP11.22□□□□□ -0.61
CCL28-204ENST00000514421 RAPGEF4Q8WZA2 1011 aa11.22□□□□□ -0.61
CCL28-204ENST00000514421 TATP17735 454 aaPredicted RBP11.21□□□□□ -0.61
CCL28-204ENST00000514421 ZCRB1Q8TBF4 217 aaKnown RBP11.21□□□□□ -0.61
CCL28-204ENST00000514421 IL13P35225 146 aa11.2□□□□□ -0.62
CCL28-204ENST00000514421 DDX54Q8TDD1 881 aaKnown RBP11.2□□□□□ -0.62
CCL28-204ENST00000514421 DISP2A7MBM2 1401 aa11.19□□□□□ -0.62
CCL28-204ENST00000514421 KIF20BQ96Q89 1820 aa11.19□□□□□ -0.62
CCL28-204ENST00000514421 ANP32CO43423 234 aa11.19□□□□□ -0.62
CCL28-204ENST00000514421 TRIM37O94972 964 aa11.19□□□□□ -0.62
CCL28-204ENST00000514421 DIAPH1O60610 1272 aaKnown RBP11.18□□□□□ -0.62
CCL28-204ENST00000514421 PPP2R1AP30153 589 aa11.18□□□□□ -0.62
CCL28-204ENST00000514421 LTN1O94822 1766 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms