RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 SHPRHQ149N8 1683 aa30.11■■■□□ 2.41
USF3-203ENST00000491165 HSPA1LP34931 641 aa30.1■■■□□ 2.41
USF3-203ENST00000491165 ZC3H6P61129 1189 aaKnown RBP30.1■■■□□ 2.41
USF3-203ENST00000491165 CDK12Q9NYV4 1490 aaPredicted RBP30.09■■■□□ 2.41
USF3-203ENST00000491165 MSH5O43196 834 aa30.08■■■□□ 2.41
USF3-203ENST00000491165 ARHGEF25Q86VW2 580 aa30.07■■■□□ 2.4
USF3-203ENST00000491165 HSP90AB2PQ58FF8 381 aa30.07■■■□□ 2.4
USF3-203ENST00000491165 RGPD5Q99666 1765 aa30.06■■■□□ 2.4
USF3-203ENST00000491165 ZBTB7CA1YPR0 619 aa30.05■■■□□ 2.4
USF3-203ENST00000491165 RNF123Q5XPI4 1314 aa30.05■■■□□ 2.4
USF3-203ENST00000491165 KIAA0232Q92628 1395 aa30.04■■■□□ 2.4
USF3-203ENST00000491165 INSRP06213 1382 aa30.03■■■□□ 2.4
USF3-203ENST00000491165 COL18A1P39060 1754 aa30.03■■■□□ 2.4
USF3-203ENST00000491165 HOXC9P31274 260 aa30.03■■■□□ 2.4
USF3-203ENST00000491165 FLT4P35916 1363 aa30.03■■■□□ 2.4
USF3-203ENST00000491165 AMPHP49418 695 aa30.02■■■□□ 2.4
USF3-203ENST00000491165 AXIN2Q9Y2T1 843 aa30.01■■■□□ 2.39
USF3-203ENST00000491165 CHRNA2Q15822 529 aa30■■■□□ 2.39
USF3-203ENST00000491165 CPDO75976 1380 aa29.99■■■□□ 2.39
USF3-203ENST00000491165 HAP1P54257 671 aaPredicted RBP29.99■■■□□ 2.39
USF3-203ENST00000491165 CFAP53Q96M91 514 aa29.99■■■□□ 2.39
USF3-203ENST00000491165 RTL1A6NKG5 1358 aa29.97■■■□□ 2.39
USF3-203ENST00000491165 KIF24Q5T7B8 1368 aa29.97■■■□□ 2.39
USF3-203ENST00000491165 JCADQ9P266 1359 aa29.97■■■□□ 2.39
USF3-203ENST00000491165 IP6K1Q92551 441 aa29.97■■■□□ 2.39
USF3-203ENST00000491165 EIF4A2Q14240 407 aaKnown RBP29.96■■■□□ 2.39
USF3-203ENST00000491165 IL13P35225 146 aa29.96■■■□□ 2.39
USF3-203ENST00000491165 DIAPH1O60610 1272 aaKnown RBP29.95■■■□□ 2.39
USF3-203ENST00000491165 ADAMTS8Q9UP79 889 aa29.95■■■□□ 2.38
USF3-203ENST00000491165 LMO7Q8WWI1 1683 aa29.94■■■□□ 2.38
USF3-203ENST00000491165 RGPD2P0DJD1 1756 aa29.94■■■□□ 2.38
USF3-203ENST00000491165 NUTM2BA6NNL0 878 aaPredicted RBP29.93■■■□□ 2.38
USF3-203ENST00000491165 NUTM2EB1AL46 878 aaPredicted RBP29.93■■■□□ 2.38
USF3-203ENST00000491165 NUTM2AQ8IVF1 878 aaPredicted RBP29.93■■■□□ 2.38
USF3-203ENST00000491165 PRDM11Q9NQV5 511 aa29.93■■■□□ 2.38
USF3-203ENST00000491165 RGPD1P0DJD0 1748 aa29.92■■■□□ 2.38
USF3-203ENST00000491165 FAM83GA6ND36 823 aa29.92■■■□□ 2.38
USF3-203ENST00000491165 LTV1Q96GA3 475 aaPredicted RBP29.92■■■□□ 2.38
USF3-203ENST00000491165 CAMTA1Q9Y6Y1 1673 aa29.91■■■□□ 2.38
USF3-203ENST00000491165 ADAMTS2O95450 1211 aa29.9■■■□□ 2.38
USF3-203ENST00000491165 U2SURPO15042 1029 aaKnown RBP29.89■■■□□ 2.38
USF3-203ENST00000491165 LRP6O75581 1613 aa29.89■■■□□ 2.38
USF3-203ENST00000491165 BLMP54132 1417 aaPredicted RBP29.89■■■□□ 2.37
USF3-203ENST00000491165 WDR43Q15061 677 aaKnown RBP eCLIP29.88■■■□□ 2.37
USF3-203ENST00000491165 ERICH6Q7L0X2 663 aa29.88■■■□□ 2.37
USF3-203ENST00000491165 ABCC6O95255 1503 aa29.87■■■□□ 2.37
USF3-203ENST00000491165 SENP3-EIF4A1A0A087X0R7 540 aa29.86■■■□□ 2.37
USF3-203ENST00000491165 CCDC136Q96JN2 1154 aa29.86■■■□□ 2.37
USF3-203ENST00000491165 U2AF1L5P0DN76 240 aaPredicted RBP29.86■■■□□ 2.37
USF3-203ENST00000491165 U2AF1Q01081 240 aaKnown RBP eCLIP29.86■■■□□ 2.37
USF3-203ENST00000491165 ERBB3P21860 1342 aa29.86■■■□□ 2.37
USF3-203ENST00000491165 COL14A1Q05707 1796 aaKnown RBP29.85■■■□□ 2.37
USF3-203ENST00000491165 ANKRD24Q8TF21 1146 aa29.84■■■□□ 2.37
USF3-203ENST00000491165 FBXO41Q8TF61 875 aa29.84■■■□□ 2.37
USF3-203ENST00000491165 EYA1Q99502 592 aa29.84■■■□□ 2.37
USF3-203ENST00000491165 PLCH1Q4KWH8 1693 aa29.83■■■□□ 2.37
USF3-203ENST00000491165 HMOX1P09601 288 aa29.83■■■□□ 2.37
USF3-203ENST00000491165 COL5A2P05997 1499 aaPredicted RBP29.82■■■□□ 2.36
USF3-203ENST00000491165 AEBP1Q8IUX7 1158 aa29.82■■■□□ 2.36
USF3-203ENST00000491165 SPATA31A6Q5VVP1 1343 aa29.81■■■□□ 2.36
USF3-203ENST00000491165 CCDC146Q8IYE0 955 aa29.81■■■□□ 2.36
USF3-203ENST00000491165 NBPF6Q5VWK0 638 aa29.81■■■□□ 2.36
USF3-203ENST00000491165 NBPF4Q96M43 638 aa29.81■■■□□ 2.36
USF3-203ENST00000491165 USHBP1Q8N6Y0 703 aa29.8■■■□□ 2.36
USF3-203ENST00000491165 BTG4Q9NY30 223 aa29.8■■■□□ 2.36
USF3-203ENST00000491165 IGSF1Q8N6C5 1336 aa29.79■■■□□ 2.36
USF3-203ENST00000491165 RSPH6AQ9H0K4 717 aa29.77■■■□□ 2.36
USF3-203ENST00000491165 SULT6B1Q6IMI4 303 aa29.77■■■□□ 2.36
USF3-203ENST00000491165 NRAPQ86VF7 1730 aa29.75■■■□□ 2.35
USF3-203ENST00000491165 PLEKHF1Q96S99 279 aa29.75■■■□□ 2.35
USF3-203ENST00000491165 FAM208AQ9UK61 1670 aaKnown RBP29.74■■■□□ 2.35
USF3-203ENST00000491165 KDRP35968 1356 aa29.74■■■□□ 2.35
USF3-203ENST00000491165 STRN4Q9NRL3 753 aa29.74■■■□□ 2.35
USF3-203ENST00000491165 SLIT2O94813 1529 aa29.73■■■□□ 2.35
USF3-203ENST00000491165 PDE3BQ13370 1112 aa29.72■■■□□ 2.35
USF3-203ENST00000491165 C8orf37Q96NL8 207 aa29.72■■■□□ 2.35
USF3-203ENST00000491165 PRKAR2BP31323 418 aa29.72■■■□□ 2.35
USF3-203ENST00000491165 LARP1Q6PKG0 1096 aaKnown RBP29.72■■■□□ 2.35
USF3-203ENST00000491165 WDR17Q8IZU2 1322 aa29.72■■■□□ 2.35
USF3-203ENST00000491165 NCAPD2Q15021 1401 aa29.71■■■□□ 2.35
USF3-203ENST00000491165 CSB-PGBD3P0DP91 1061 aa29.71■■■□□ 2.35
USF3-203ENST00000491165 RRP1P56182 461 aaKnown RBP29.71■■■□□ 2.35
USF3-203ENST00000491165 FCHSD2O94868 740 aa29.71■■■□□ 2.35
USF3-203ENST00000491165 NWD2Q9ULI1 1742 aa29.7■■■□□ 2.35
USF3-203ENST00000491165 PHACTR3Q96KR7 559 aa29.69■■■□□ 2.34
USF3-203ENST00000491165 NLRP2Q9NX02 1062 aa29.69■■■□□ 2.34
USF3-203ENST00000491165 RCAN3Q9UKA8 241 aa29.68■■■□□ 2.34
USF3-203ENST00000491165 APAF1O14727 1248 aa29.66■■■□□ 2.34
USF3-203ENST00000491165 EVA1CP58658 441 aa29.66■■■□□ 2.34
USF3-203ENST00000491165 RUNDC1Q96C34 613 aa29.66■■■□□ 2.34
USF3-203ENST00000491165 BCL9LQ86UU0 1499 aa29.66■■■□□ 2.34
USF3-203ENST00000491165 TOM1L2Q6ZVM7 507 aa29.66■■■□□ 2.34
USF3-203ENST00000491165 NGLY1Q96IV0 654 aa29.66■■■□□ 2.34
USF3-203ENST00000491165 SALL2Q9Y467 1007 aaPredicted RBP29.64■■■□□ 2.34
USF3-203ENST00000491165 TCP11L2Q8N4U5 519 aa29.63■■■□□ 2.33
USF3-203ENST00000491165 CRB1P82279 1406 aa29.62■■■□□ 2.33
USF3-203ENST00000491165 FNBP4Q8N3X1 1017 aaPredicted RBP29.62■■■□□ 2.33
USF3-203ENST00000491165 USP35Q9P2H5 1018 aa29.62■■■□□ 2.33
USF3-203ENST00000491165 RRP7AQ9Y3A4 280 aaKnown RBP29.62■■■□□ 2.33
USF3-203ENST00000491165 MEX3CQ5U5Q3 659 aaKnown RBP29.61■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms