RNA–Protein interactions for RNA: ENST00000466912.5

PTPN20-211, Transcript of protein tyrosine phosphatase, non-receptor type 20, human

TSL 3

Gene PTPN20, Length 446 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN20-211	ENST00000466912	RXRB	P28702	533 aa		13.76	□□□□□ -0.21
PTPN20-211	ENST00000466912	RBM6	P78332	1123 aa	Known RBP	13.76	□□□□□ -0.21
PTPN20-211	ENST00000466912	GJD4	Q96KN9	370 aa	Predicted RBP	13.76	□□□□□ -0.21
PTPN20-211	ENST00000466912	NSD2	O96028	1365 aa		13.75	□□□□□ -0.21
PTPN20-211	ENST00000466912	RRS1	Q15050	365 aa	Known RBP	13.75	□□□□□ -0.21
PTPN20-211	ENST00000466912	LMO7	Q8WWI1	1683 aa		13.75	□□□□□ -0.21
PTPN20-211	ENST00000466912	LARP1	Q6PKG0	1096 aa	Known RBP	13.74	□□□□□ -0.21
PTPN20-211	ENST00000466912	IP6K1	Q92551	441 aa		13.74	□□□□□ -0.21
PTPN20-211	ENST00000466912	STRN4	Q9NRL3	753 aa		13.74	□□□□□ -0.21
PTPN20-211	ENST00000466912	COL5A2	P05997	1499 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN20-211	ENST00000466912	SPATA31A5	Q5VU36	1347 aa		13.73	□□□□□ -0.21
PTPN20-211	ENST00000466912	SPATA31A7	Q8IWB4	1347 aa		13.73	□□□□□ -0.21
PTPN20-211	ENST00000466912	EVA1C	P58658	441 aa		13.73	□□□□□ -0.21
PTPN20-211	ENST00000466912	NWD2	Q9ULI1	1742 aa		13.73	□□□□□ -0.21
PTPN20-211	ENST00000466912	PLCH1	Q4KWH8	1693 aa		13.72	□□□□□ -0.21
PTPN20-211	ENST00000466912	NPC1L1	Q9UHC9	1359 aa		13.72	□□□□□ -0.21
PTPN20-211	ENST00000466912	ONECUT3	O60422	494 aa	Predicted RBP	13.72	□□□□□ -0.21
PTPN20-211	ENST00000466912	HOXC9	P31274	260 aa		13.72	□□□□□ -0.21
PTPN20-211	ENST00000466912	COL18A1	P39060	1754 aa		13.72	□□□□□ -0.21
PTPN20-211	ENST00000466912	SPATA31A1	Q5TZJ5	1347 aa		13.71	□□□□□ -0.21
PTPN20-211	ENST00000466912	ABCC6	O95255	1503 aa		13.71	□□□□□ -0.21
PTPN20-211	ENST00000466912	NRAP	Q86VF7	1730 aa		13.71	□□□□□ -0.21
PTPN20-211	ENST00000466912	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.71	□□□□□ -0.21
PTPN20-211	ENST00000466912	MORC1	Q86VD1	984 aa		13.71	□□□□□ -0.21
PTPN20-211	ENST00000466912	POLK	Q9UBT6	870 aa		13.71	□□□□□ -0.21
PTPN20-211	ENST00000466912	EMILIN1	Q9Y6C2	1016 aa		13.71	□□□□□ -0.21
PTPN20-211	ENST00000466912	ERBB3	P21860	1342 aa		13.7	□□□□□ -0.22
PTPN20-211	ENST00000466912	WDR17	Q8IZU2	1322 aa		13.7	□□□□□ -0.22
PTPN20-211	ENST00000466912	TNNT2	P45379	298 aa	Predicted RBP	13.7	□□□□□ -0.22
PTPN20-211	ENST00000466912	AMPH	P49418	695 aa		13.7	□□□□□ -0.22
PTPN20-211	ENST00000466912	CC2D1B	Q5T0F9	858 aa	Known RBP	13.7	□□□□□ -0.22
PTPN20-211	ENST00000466912	CCDC9	Q9Y3X0	531 aa	Known RBP	13.7	□□□□□ -0.22
PTPN20-211	ENST00000466912	GLI3	P10071	1580 aa		13.7	□□□□□ -0.22
PTPN20-211	ENST00000466912	RTL1	A6NKG5	1358 aa		13.7	□□□□□ -0.22
PTPN20-211	ENST00000466912	KIF24	Q5T7B8	1368 aa		13.7	□□□□□ -0.22
PTPN20-211	ENST00000466912	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPN20-211	ENST00000466912	DDX10	Q13206	875 aa	Known RBP	13.69	□□□□□ -0.22
PTPN20-211	ENST00000466912	HSP90AB2P	Q58FF8	381 aa		13.69	□□□□□ -0.22
PTPN20-211	ENST00000466912	ANKRD24	Q8TF21	1146 aa		13.69	□□□□□ -0.22
PTPN20-211	ENST00000466912	RGS12	O14924	1447 aa		13.69	□□□□□ -0.22
PTPN20-211	ENST00000466912	BLM	P54132	1417 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPN20-211	ENST00000466912	KIF20B	Q96Q89	1820 aa		13.69	□□□□□ -0.22
PTPN20-211	ENST00000466912	CRB1	P82279	1406 aa		13.68	□□□□□ -0.22
PTPN20-211	ENST00000466912	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.68	□□□□□ -0.22
PTPN20-211	ENST00000466912	BARGIN	Q6ZT62	677 aa		13.68	□□□□□ -0.22
PTPN20-211	ENST00000466912	CSB-PGBD3	P0DP91	1061 aa		13.67	□□□□□ -0.22
PTPN20-211	ENST00000466912	FAM98C	Q17RN3	349 aa	Known RBP	13.67	□□□□□ -0.22
PTPN20-211	ENST00000466912	TOM1L2	Q6ZVM7	507 aa		13.67	□□□□□ -0.22
PTPN20-211	ENST00000466912	TCP11L2	Q8N4U5	519 aa		13.67	□□□□□ -0.22
PTPN20-211	ENST00000466912	CARD10	Q9BWT7	1032 aa		13.67	□□□□□ -0.22
PTPN20-211	ENST00000466912	USP35	Q9P2H5	1018 aa		13.67	□□□□□ -0.22
PTPN20-211	ENST00000466912	THRAP3	Q9Y2W1	955 aa	Known RBP	13.67	□□□□□ -0.22
PTPN20-211	ENST00000466912	FLT4	P35916	1363 aa		13.67	□□□□□ -0.22
PTPN20-211	ENST00000466912	SEPT12	Q8IYM1	358 aa		13.66	□□□□□ -0.22
PTPN20-211	ENST00000466912	INSR	P06213	1382 aa		13.66	□□□□□ -0.22
PTPN20-211	ENST00000466912	SMG6	Q86US8	1419 aa	Known RBP	13.65	□□□□□ -0.22
PTPN20-211	ENST00000466912	PPM1G	O15355	546 aa	Predicted RBP	13.65	□□□□□ -0.22
PTPN20-211	ENST00000466912	LTV1	Q96GA3	475 aa	Predicted RBP	13.65	□□□□□ -0.22
PTPN20-211	ENST00000466912	CNGB1	Q14028	1251 aa	Predicted RBP	13.64	□□□□□ -0.23
PTPN20-211	ENST00000466912	NLRP2	Q9NX02	1062 aa		13.64	□□□□□ -0.23
PTPN20-211	ENST00000466912	PEAK1	Q9H792	1746 aa		13.64	□□□□□ -0.23
PTPN20-211	ENST00000466912	LTN1	O94822	1766 aa		13.63	□□□□□ -0.23
PTPN20-211	ENST00000466912	ANKRD26	Q9UPS8	1709 aa		13.62	□□□□□ -0.23
PTPN20-211	ENST00000466912	MTHFS	P49914	203 aa		13.62	□□□□□ -0.23
PTPN20-211	ENST00000466912	NBPF6	Q5VWK0	638 aa		13.62	□□□□□ -0.23
PTPN20-211	ENST00000466912	NBPF4	Q96M43	638 aa		13.62	□□□□□ -0.23
PTPN20-211	ENST00000466912	EIF4A2	Q14240	407 aa	Known RBP	13.61	□□□□□ -0.23
PTPN20-211	ENST00000466912	DISP2	A7MBM2	1401 aa		13.61	□□□□□ -0.23
PTPN20-211	ENST00000466912	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.6	□□□□□ -0.23
PTPN20-211	ENST00000466912	PARD3	Q8TEW0	1356 aa		13.59	□□□□□ -0.23
PTPN20-211	ENST00000466912	RGPD5	Q99666	1765 aa		13.59	□□□□□ -0.23
PTPN20-211	ENST00000466912		A0A0G2JS52	829 aa		13.59	□□□□□ -0.23
PTPN20-211	ENST00000466912	PPP2R1A	P30153	589 aa		13.59	□□□□□ -0.23
PTPN20-211	ENST00000466912	MYT1	Q01538	1121 aa		13.59	□□□□□ -0.23
PTPN20-211	ENST00000466912	KRT27	Q7Z3Y8	459 aa		13.59	□□□□□ -0.23
PTPN20-211	ENST00000466912	EYA1	Q99502	592 aa		13.59	□□□□□ -0.23
PTPN20-211	ENST00000466912	THSD7A	Q9UPZ6	1657 aa		13.59	□□□□□ -0.23
PTPN20-211	ENST00000466912	IL2RB	P14784	551 aa		13.58	□□□□□ -0.24
PTPN20-211	ENST00000466912	IL13	P35225	146 aa		13.58	□□□□□ -0.24
PTPN20-211	ENST00000466912	USHBP1	Q8N6Y0	703 aa		13.58	□□□□□ -0.24
PTPN20-211	ENST00000466912	NCAPD2	Q15021	1401 aa		13.57	□□□□□ -0.24
PTPN20-211	ENST00000466912	SOCS7	O14512	581 aa		13.57	□□□□□ -0.24
PTPN20-211	ENST00000466912	MAP2	P11137	1827 aa	Known RBP	13.56	□□□□□ -0.24
PTPN20-211	ENST00000466912	RALBP1	Q15311	655 aa		13.56	□□□□□ -0.24
PTPN20-211	ENST00000466912	DDB1	Q16531	1140 aa		13.56	□□□□□ -0.24
PTPN20-211	ENST00000466912	IGSF1	Q8N6C5	1336 aa		13.56	□□□□□ -0.24
PTPN20-211	ENST00000466912	EXOC5	O00471	708 aa		13.54	□□□□□ -0.24
PTPN20-211	ENST00000466912	PDE3B	Q13370	1112 aa		13.54	□□□□□ -0.24
PTPN20-211	ENST00000466912	FAM182B	Q5T319	152 aa		13.54	□□□□□ -0.24
PTPN20-211	ENST00000466912	COL3A1	P02461	1466 aa	Predicted RBP	13.54	□□□□□ -0.24
PTPN20-211	ENST00000466912	MEGF6	O75095	1541 aa		13.54	□□□□□ -0.24
PTPN20-211	ENST00000466912	FAM208A	Q9UK61	1670 aa	Known RBP	13.53	□□□□□ -0.24
PTPN20-211	ENST00000466912	DIAPH1	O60610	1272 aa	Known RBP	13.53	□□□□□ -0.24
PTPN20-211	ENST00000466912	MARCH10	Q8NA82	808 aa	Predicted RBP	13.53	□□□□□ -0.24
PTPN20-211	ENST00000466912	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
PTPN20-211	ENST00000466912	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.53	□□□□□ -0.24
PTPN20-211	ENST00000466912	AEBP1	Q8IUX7	1158 aa		13.52	□□□□□ -0.25
PTPN20-211	ENST00000466912	RAPGEF4	Q8WZA2	1011 aa		13.52	□□□□□ -0.25
PTPN20-211	ENST00000466912	OVOS2	A0A0G2JMS6	1433 aa		13.52	□□□□□ -0.25
PTPN20-211	ENST00000466912	TNS2	Q63HR2	1409 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms