RNA–Protein interactions for RNA: ENST00000427299.6

LINC00458-202, long intergenic non-protein coding RNA 458, humanhuman

TSL 1 (best) BASIC

Gene LINC00458, Length 1,030 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-202ENST00000427299 FKBPLQ9UIM3 349 aa11.34□□□□□ -0.59
LINC00458-202ENST00000427299 TSEN34Q9BSV6 310 aaKnown RBP11.33□□□□□ -0.6
LINC00458-202ENST00000427299 KDM4CQ9H3R0 1056 aa11.33□□□□□ -0.6
LINC00458-202ENST00000427299 DNMT3LQ9UJW3 386 aa11.33□□□□□ -0.6
LINC00458-202ENST00000427299 PPP2R2DQ66LE6 453 aa11.32□□□□□ -0.6
LINC00458-202ENST00000427299 PROCA1Q8NCQ7 364 aaPredicted RBP11.32□□□□□ -0.6
LINC00458-202ENST00000427299 ARHGAP9Q9BRR9 750 aa11.32□□□□□ -0.6
LINC00458-202ENST00000427299 GPBP1L1Q9HC44 474 aaPredicted RBP11.32□□□□□ -0.6
LINC00458-202ENST00000427299 PPP1R26Q5T8A7 1209 aaPredicted RBP11.31□□□□□ -0.6
LINC00458-202ENST00000427299 FAM117AQ9C073 453 aa11.31□□□□□ -0.6
LINC00458-202ENST00000427299 PPFIA3O75145 1194 aa11.3□□□□□ -0.6
LINC00458-202ENST00000427299 ZC3H4Q9UPT8 1303 aaKnown RBP11.3□□□□□ -0.6
LINC00458-202ENST00000427299 NR6A1Q15406 480 aa11.29□□□□□ -0.6
LINC00458-202ENST00000427299 Q6ZVU0 165 aa11.29□□□□□ -0.6
LINC00458-202ENST00000427299 DDRGK1Q96HY6 314 aa11.29□□□□□ -0.6
LINC00458-202ENST00000427299 OCSTAMPQ9BR26 566 aa11.29□□□□□ -0.6
LINC00458-202ENST00000427299 SLC10A4Q96EP9 437 aa11.28□□□□□ -0.6
LINC00458-202ENST00000427299 KCTD15Q96SI1 283 aaPredicted RBP11.27□□□□□ -0.61
LINC00458-202ENST00000427299 PGPEP1Q9NXJ5 209 aa11.27□□□□□ -0.61
LINC00458-202ENST00000427299 CDV3Q9UKY7 258 aaKnown RBP11.27□□□□□ -0.61
LINC00458-202ENST00000427299 TTLL8A6PVC2 850 aa11.26□□□□□ -0.61
LINC00458-202ENST00000427299 CBLBQ13191 982 aa11.26□□□□□ -0.61
LINC00458-202ENST00000427299 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.25□□□□□ -0.61
LINC00458-202ENST00000427299 ZBTB33Q86T24 672 aa11.25□□□□□ -0.61
LINC00458-202ENST00000427299 GPSM3Q9Y4H4 160 aa11.25□□□□□ -0.61
LINC00458-202ENST00000427299 SPINT1O43278 529 aa11.24□□□□□ -0.61
LINC00458-202ENST00000427299 AP1G2O75843 785 aa11.23□□□□□ -0.61
LINC00458-202ENST00000427299 PTK2Q05397 1052 aa11.23□□□□□ -0.61
LINC00458-202ENST00000427299 DHX9Q08211 1270 aaKnown RBP11.23□□□□□ -0.61
LINC00458-202ENST00000427299 INTS6LQ5JSJ4 861 aaKnown RBP11.23□□□□□ -0.61
LINC00458-202ENST00000427299 ADAM32Q8TC27 787 aa11.22□□□□□ -0.61
LINC00458-202ENST00000427299 EPS8L1Q8TE68 723 aa11.22□□□□□ -0.61
LINC00458-202ENST00000427299 HMX1Q9NP08 348 aaPredicted RBP11.22□□□□□ -0.61
LINC00458-202ENST00000427299 PTSQ03393 145 aa11.21□□□□□ -0.61
LINC00458-202ENST00000427299 USP17L8P0C7I0 530 aa11.19□□□□□ -0.62
LINC00458-202ENST00000427299 FIGNL2A6NMB9 653 aa11.18□□□□□ -0.62
LINC00458-202ENST00000427299 ATP1B4Q9UN42 357 aaPredicted RBP11.18□□□□□ -0.62
LINC00458-202ENST00000427299 KRT76Q01546 638 aa11.17□□□□□ -0.62
LINC00458-202ENST00000427299 NBPF20Q3BBV1 942 aa11.17□□□□□ -0.62
LINC00458-202ENST00000427299 GPR161Q8N6U8 529 aaKnown RBP11.17□□□□□ -0.62
LINC00458-202ENST00000427299 AGBL1Q96MI9 1066 aa11.17□□□□□ -0.62
LINC00458-202ENST00000427299 RFC5P40937 340 aa11.15□□□□□ -0.62
LINC00458-202ENST00000427299 CTSOP43234 321 aaPredicted RBP11.15□□□□□ -0.62
LINC00458-202ENST00000427299 CCDC155Q8N6L0 562 aa11.15□□□□□ -0.62
LINC00458-202ENST00000427299 PNMA1Q8ND90 353 aa11.15□□□□□ -0.62
LINC00458-202ENST00000427299 NANOS1Q8WY41 292 aaKnown RBP11.15□□□□□ -0.62
LINC00458-202ENST00000427299 RELBQ01201 579 aa11.14□□□□□ -0.63
LINC00458-202ENST00000427299 ZNF784Q8NCA9 323 aaPredicted RBP11.14□□□□□ -0.63
LINC00458-202ENST00000427299 INSM2Q96T92 566 aaPredicted RBP11.14□□□□□ -0.63
LINC00458-202ENST00000427299 TMPRSS4Q9NRS4 437 aa11.14□□□□□ -0.63
LINC00458-202ENST00000427299 SLC35F4A4IF30 521 aa11.13□□□□□ -0.63
LINC00458-202ENST00000427299 BCANQ96GW7 911 aa11.13□□□□□ -0.63
LINC00458-202ENST00000427299 LOC100996750A0A140TA64 210 aa11.12□□□□□ -0.63
LINC00458-202ENST00000427299 TRIM34Q9BYJ4 488 aa11.12□□□□□ -0.63
LINC00458-202ENST00000427299 KRTAP4-6Q9BYQ5 205 aa11.12□□□□□ -0.63
LINC00458-202ENST00000427299 ESPNB1AK53 854 aa11.11□□□□□ -0.63
LINC00458-202ENST00000427299 ERVH48-1M5A8F1 160 aa11.11□□□□□ -0.63
LINC00458-202ENST00000427299 LILRA1O75019 489 aa11.11□□□□□ -0.63
LINC00458-202ENST00000427299 DZIP3Q86Y13 1208 aaKnown RBP11.11□□□□□ -0.63
LINC00458-202ENST00000427299 RNF217Q8TC41 542 aa11.11□□□□□ -0.63
LINC00458-202ENST00000427299 GOPCQ9HD26 462 aa11.11□□□□□ -0.63
LINC00458-202ENST00000427299 ADH1AP07327 375 aa11.1□□□□□ -0.63
LINC00458-202ENST00000427299 KDF1Q8NAX2 398 aaPredicted RBP11.1□□□□□ -0.63
LINC00458-202ENST00000427299 CNTNAP3BQ96NU0 1288 aa11.1□□□□□ -0.63
LINC00458-202ENST00000427299 CNTNAP3Q9BZ76 1288 aa11.1□□□□□ -0.63
LINC00458-202ENST00000427299 ITGA6P23229 1130 aa11.09□□□□□ -0.63
LINC00458-202ENST00000427299 ADD1P35611 737 aaKnown RBP11.09□□□□□ -0.63
LINC00458-202ENST00000427299 RAB15P59190 212 aa11.09□□□□□ -0.63
LINC00458-202ENST00000427299 COL25A1Q9BXS0 654 aaPredicted RBP11.09□□□□□ -0.63
LINC00458-202ENST00000427299 ZNF395Q9H8N7 513 aaPredicted RBP11.09□□□□□ -0.63
LINC00458-202ENST00000427299 POLMQ9NP87 494 aaPredicted RBP11.09□□□□□ -0.63
LINC00458-202ENST00000427299 SENP3-EIF4A1A0A087X0R7 540 aa11.08□□□□□ -0.64
LINC00458-202ENST00000427299 RNFT1Q5M7Z0 435 aa11.08□□□□□ -0.64
LINC00458-202ENST00000427299 FOXD4L5Q5VV16 416 aaPredicted RBP11.06□□□□□ -0.64
LINC00458-202ENST00000427299 SEPT12Q8IYM1 358 aa11.06□□□□□ -0.64
LINC00458-202ENST00000427299 PTGIRP43119 386 aa11.05□□□□□ -0.64
LINC00458-202ENST00000427299 GSK3AP49840 483 aa11.05□□□□□ -0.64
LINC00458-202ENST00000427299 TMEM259Q4ZIN3 620 aa11.05□□□□□ -0.64
LINC00458-202ENST00000427299 PCMTD1Q96MG8 357 aaPredicted RBP11.05□□□□□ -0.64
LINC00458-202ENST00000427299 KCNMA1Q12791 1236 aa11.04□□□□□ -0.64
LINC00458-202ENST00000427299 VWA5B2Q8N398 1253 aa11.04□□□□□ -0.64
LINC00458-202ENST00000427299 GJD4Q96KN9 370 aaPredicted RBP11.03□□□□□ -0.64
LINC00458-202ENST00000427299 ZBBXA8MT70 800 aa11.02□□□□□ -0.65
LINC00458-202ENST00000427299 SV2AQ7L0J3 742 aa11.02□□□□□ -0.65
LINC00458-202ENST00000427299 CYLDQ9NQC7 956 aa11.02□□□□□ -0.65
LINC00458-202ENST00000427299 CDC14CA4D256 554 aa11.01□□□□□ -0.65
LINC00458-202ENST00000427299 SLURP2P0DP57 97 aa11.01□□□□□ -0.65
LINC00458-202ENST00000427299 ZNF385CQ66K41 422 aaPredicted RBP11.01□□□□□ -0.65
LINC00458-202ENST00000427299 FBXO45P0C2W1 286 aa11□□□□□ -0.65
LINC00458-202ENST00000427299 KCTD17Q8N5Z5 321 aa11□□□□□ -0.65
LINC00458-202ENST00000427299 ADAMTS8Q9UP79 889 aa11□□□□□ -0.65
LINC00458-202ENST00000427299 GIGYF1O75420 1035 aaPredicted RBP10.99□□□□□ -0.65
LINC00458-202ENST00000427299 SUZ12Q15022 739 aaKnown RBP10.99□□□□□ -0.65
LINC00458-202ENST00000427299 LYSMD3Q7Z3D4 306 aa10.99□□□□□ -0.65
LINC00458-202ENST00000427299 RNF144AP50876 292 aaPredicted RBP10.98□□□□□ -0.65
LINC00458-202ENST00000427299 PCDHB9Q9Y5E1 797 aa10.98□□□□□ -0.65
LINC00458-202ENST00000427299 WHAMMQ8TF30 809 aa10.97□□□□□ -0.65
LINC00458-202ENST00000427299 TRIM52Q96A61 297 aa10.97□□□□□ -0.65
LINC00458-202ENST00000427299 CUEDC1Q9NWM3 386 aaPredicted RBP10.97□□□□□ -0.65
LINC00458-202ENST00000427299 SVOPQ8N4V2 548 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms