RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PCDHB9Q9Y5E1 797 aa10.7□□□□□ -0.7
USP40-202ENST00000409945 SOX11P35716 441 aa10.7□□□□□ -0.7
USP40-202ENST00000409945 ITGBL1O95965 494 aaPredicted RBP10.69□□□□□ -0.7
USP40-202ENST00000409945 ZNF511Q8NB15 262 aa10.69□□□□□ -0.7
USP40-202ENST00000409945 PNMA1Q8ND90 353 aa10.69□□□□□ -0.7
USP40-202ENST00000409945 ARHGAP9Q9BRR9 750 aa10.69□□□□□ -0.7
USP40-202ENST00000409945 CEP126Q9P2H0 1117 aa10.69□□□□□ -0.7
USP40-202ENST00000409945 PTK2Q05397 1052 aa10.68□□□□□ -0.7
USP40-202ENST00000409945 NBPF14Q5TI25 921 aa10.68□□□□□ -0.7
USP40-202ENST00000409945 ATP9BO43861 1147 aa10.68□□□□□ -0.7
USP40-202ENST00000409945 SH3BP2P78314 561 aa10.68□□□□□ -0.7
USP40-202ENST00000409945 EMID1Q96A84 441 aaPredicted RBP10.68□□□□□ -0.7
USP40-202ENST00000409945 POLA1P09884 1462 aaPredicted RBP10.67□□□□□ -0.7
USP40-202ENST00000409945 KANK4Q5T7N3 995 aaPredicted RBP10.67□□□□□ -0.7
USP40-202ENST00000409945 PHTF2Q8N3S3 785 aa10.67□□□□□ -0.7
USP40-202ENST00000409945 SOGA1O94964 1423 aa10.67□□□□□ -0.7
USP40-202ENST00000409945 PDIA4P13667 645 aaKnown RBP10.66□□□□□ -0.7
USP40-202ENST00000409945 KCNC4Q03721 635 aa10.66□□□□□ -0.7
USP40-202ENST00000409945 ERFEQ4G0M1 354 aa10.66□□□□□ -0.7
USP40-202ENST00000409945 HCSTQ9UBK5 93 aa10.66□□□□□ -0.7
USP40-202ENST00000409945 GPSM3Q9Y4H4 160 aa10.66□□□□□ -0.7
USP40-202ENST00000409945 SKOR1P84550 965 aa10.66□□□□□ -0.7
USP40-202ENST00000409945 ARMC2Q8NEN0 867 aa10.66□□□□□ -0.7
USP40-202ENST00000409945 USP17L3A6NCW0 530 aa10.65□□□□□ -0.7
USP40-202ENST00000409945 USP17L4A6NCW7 530 aa10.65□□□□□ -0.7
USP40-202ENST00000409945 SKIP12755 728 aa10.65□□□□□ -0.7
USP40-202ENST00000409945 PPP1R18Q6NYC8 613 aa10.65□□□□□ -0.7
USP40-202ENST00000409945 USP17L2Q6R6M4 530 aa10.65□□□□□ -0.7
USP40-202ENST00000409945 USP17L1Q7RTZ2 530 aa10.65□□□□□ -0.7
USP40-202ENST00000409945 FGD5Q6ZNL6 1462 aa10.65□□□□□ -0.7
USP40-202ENST00000409945 USP17L5A8MUK1 530 aa10.64□□□□□ -0.71
USP40-202ENST00000409945 GPKOWQ92917 476 aaPredicted RBP eCLIP10.64□□□□□ -0.71
USP40-202ENST00000409945 WDR97A6NE52 1622 aa10.64□□□□□ -0.71
USP40-202ENST00000409945 CUX1P39880 1505 aa10.64□□□□□ -0.71
USP40-202ENST00000409945 PPP1R15AO75807 674 aaPredicted RBP10.64□□□□□ -0.71
USP40-202ENST00000409945 ZNF608Q9ULD9 1512 aaPredicted RBP10.63□□□□□ -0.71
USP40-202ENST00000409945 ZBTB33Q86T24 672 aa10.63□□□□□ -0.71
USP40-202ENST00000409945 CCDC85AQ96PX6 553 aaPredicted RBP10.63□□□□□ -0.71
USP40-202ENST00000409945 TARBP1Q13395 1621 aaKnown RBP10.63□□□□□ -0.71
USP40-202ENST00000409945 EIF4G3O43432 1585 aaKnown RBP10.63□□□□□ -0.71
USP40-202ENST00000409945 GIGYF1O75420 1035 aaPredicted RBP10.62□□□□□ -0.71
USP40-202ENST00000409945 TRIM32Q13049 653 aa10.62□□□□□ -0.71
USP40-202ENST00000409945 NCOA4Q13772 614 aa10.62□□□□□ -0.71
USP40-202ENST00000409945 AGERQ15109 404 aa10.62□□□□□ -0.71
USP40-202ENST00000409945 WRNQ14191 1432 aaPredicted RBP eCLIP10.62□□□□□ -0.71
USP40-202ENST00000409945 ZMIZ1Q9ULJ6 1067 aa10.62□□□□□ -0.71
USP40-202ENST00000409945 CRTC2Q53ET0 693 aaPredicted RBP10.61□□□□□ -0.71
USP40-202ENST00000409945 RAD54L2Q9Y4B4 1467 aa10.61□□□□□ -0.71
USP40-202ENST00000409945 STK32AQ8WU08 396 aa10.6□□□□□ -0.71
USP40-202ENST00000409945 CDCA7Q9BWT1 371 aaPredicted RBP10.6□□□□□ -0.71
USP40-202ENST00000409945 PODXL2Q9NZ53 605 aa10.6□□□□□ -0.71
USP40-202ENST00000409945 AQRO60306 1485 aaKnown RBP eCLIP10.6□□□□□ -0.71
USP40-202ENST00000409945 TRAF7Q6Q0C0 670 aa10.6□□□□□ -0.71
USP40-202ENST00000409945 RNF135Q8IUD6 432 aa10.6□□□□□ -0.71
USP40-202ENST00000409945 PLPP7Q8NBV4 271 aa10.6□□□□□ -0.71
USP40-202ENST00000409945 TRAIPQ9BWF2 469 aa10.6□□□□□ -0.71
USP40-202ENST00000409945 MMRN1Q13201 1228 aa10.59□□□□□ -0.71
USP40-202ENST00000409945 SLFNL1Q499Z3 407 aa10.59□□□□□ -0.71
USP40-202ENST00000409945 BPHLQ86WA6 291 aaPredicted RBP10.59□□□□□ -0.71
USP40-202ENST00000409945 C1QTNF2Q9BXJ5 285 aa10.59□□□□□ -0.71
USP40-202ENST00000409945 CHIC2Q9UKJ5 165 aa10.59□□□□□ -0.71
USP40-202ENST00000409945 TMEM88BA6NKF7 163 aa10.58□□□□□ -0.72
USP40-202ENST00000409945 DZIP3Q86Y13 1208 aaKnown RBP10.58□□□□□ -0.72
USP40-202ENST00000409945 TDRD9Q8NDG6 1382 aaKnown RBP10.58□□□□□ -0.72
USP40-202ENST00000409945 ANKLE1Q8NAG6 615 aa10.58□□□□□ -0.72
USP40-202ENST00000409945 NFATC2IPQ8NCF5 419 aa10.58□□□□□ -0.72
USP40-202ENST00000409945 TOP2BQ02880 1626 aa10.58□□□□□ -0.72
USP40-202ENST00000409945 LIAT1Q6ZQX7 453 aa10.57□□□□□ -0.72
USP40-202ENST00000409945 BIVM-ERCC5R4GMW8 1640 aa10.57□□□□□ -0.72
USP40-202ENST00000409945 CLDN10P78369 228 aa10.56□□□□□ -0.72
USP40-202ENST00000409945 SLAIN2Q9P270 581 aa10.56□□□□□ -0.72
USP40-202ENST00000409945 KIAA1024Q9UPX6 916 aa10.56□□□□□ -0.72
USP40-202ENST00000409945 ATG7O95352 703 aa10.56□□□□□ -0.72
USP40-202ENST00000409945 AEBP1Q8IUX7 1158 aa10.56□□□□□ -0.72
USP40-202ENST00000409945 MKRN1Q9UHC7 482 aaKnown RBP10.56□□□□□ -0.72
USP40-202ENST00000409945 GRIN2BQ13224 1484 aa10.56□□□□□ -0.72
USP40-202ENST00000409945 RAB15P59190 212 aa10.55□□□□□ -0.72
USP40-202ENST00000409945 PLEKHM2Q8IWE5 1019 aa10.55□□□□□ -0.72
USP40-202ENST00000409945 VRTNQ9H8Y1 702 aa10.55□□□□□ -0.72
USP40-202ENST00000409945 ABCA10Q8WWZ4 1543 aa10.55□□□□□ -0.72
USP40-202ENST00000409945 TMEM164Q5U3C3 297 aa10.54□□□□□ -0.72
USP40-202ENST00000409945 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.54□□□□□ -0.72
USP40-202ENST00000409945 ACIN1Q9UKV3 1341 aaKnown RBP10.54□□□□□ -0.72
USP40-202ENST00000409945 GAPVD1Q14C86 1478 aa10.54□□□□□ -0.72
USP40-202ENST00000409945 MAGI1Q96QZ7 1491 aaPredicted RBP10.54□□□□□ -0.72
USP40-202ENST00000409945 CHMP7Q8WUX9 453 aaPredicted RBP10.54□□□□□ -0.72
USP40-202ENST00000409945 SLC10A4Q96EP9 437 aa10.54□□□□□ -0.72
USP40-202ENST00000409945 SYNJ1O43426 1573 aa10.53□□□□□ -0.72
USP40-202ENST00000409945 ZNF594Q96JF6 807 aaPredicted RBP10.52□□□□□ -0.72
USP40-202ENST00000409945 TLL2Q9Y6L7 1015 aa10.52□□□□□ -0.72
USP40-202ENST00000409945 SCTRP47872 440 aa10.52□□□□□ -0.73
USP40-202ENST00000409945 PTK7Q13308 1070 aa10.52□□□□□ -0.73
USP40-202ENST00000409945 OXLD1Q5BKU9 147 aa10.52□□□□□ -0.73
USP40-202ENST00000409945 SNAPC4Q5SXM2 1469 aa10.52□□□□□ -0.73
USP40-202ENST00000409945 ESPNB1AK53 854 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 USP17L15C9J2P7 530 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 USP17L10C9JJH3 530 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 USP17L13C9JLJ4 530 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 USP17L12C9JPN9 530 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 USP17L11C9JVI0 530 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms