RNA–Protein interactions for RNA: ENST00000312970.12

TPM3-203, Transcript of tropomyosin 3, humanhuman

TSL 5

Gene TPM3, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-203ENST00000312970 NUP188Q5SRE5 1749 aa11.58□□□□□ -0.56
TPM3-203ENST00000312970 AATKQ6ZMQ8 1374 aa11.58□□□□□ -0.56
TPM3-203ENST00000312970 APBA3O96018 575 aa11.58□□□□□ -0.56
TPM3-203ENST00000312970 CARD11Q9BXL7 1154 aa11.58□□□□□ -0.56
TPM3-203ENST00000312970 PARP4Q9UKK3 1724 aaKnown RBP11.57□□□□□ -0.56
TPM3-203ENST00000312970 PARD3Q8TEW0 1356 aa11.57□□□□□ -0.56
TPM3-203ENST00000312970 KCNH5Q8NCM2 988 aa11.57□□□□□ -0.56
TPM3-203ENST00000312970 TTC21AQ8NDW8 1320 aa11.57□□□□□ -0.56
TPM3-203ENST00000312970 C11orf95C9JLR9 678 aaPredicted RBP11.56□□□□□ -0.56
TPM3-203ENST00000312970 TOM1L2Q6ZVM7 507 aa11.56□□□□□ -0.56
TPM3-203ENST00000312970 AXIN2Q9Y2T1 843 aa11.56□□□□□ -0.56
TPM3-203ENST00000312970 KTN1Q86UP2 1357 aaKnown RBP11.55□□□□□ -0.56
TPM3-203ENST00000312970 CRB1P82279 1406 aa11.55□□□□□ -0.56
TPM3-203ENST00000312970 ARHGEF25Q86VW2 580 aa11.55□□□□□ -0.56
TPM3-203ENST00000312970 COL5A2P05997 1499 aaPredicted RBP11.55□□□□□ -0.56
TPM3-203ENST00000312970 CEP350Q5VT06 3117 aa11.55□□□□□ -0.56
TPM3-203ENST00000312970 CPSF1Q10570 1443 aaKnown RBP11.54□□□□□ -0.56
TPM3-203ENST00000312970 SLIT3O75094 1523 aa11.54□□□□□ -0.56
TPM3-203ENST00000312970 TONSLQ96HA7 1378 aa11.54□□□□□ -0.56
TPM3-203ENST00000312970 SBNO2Q9Y2G9 1366 aa11.54□□□□□ -0.56
TPM3-203ENST00000312970 SBF2Q86WG5 1849 aa11.53□□□□□ -0.56
TPM3-203ENST00000312970 WNK3Q9BYP7 1800 aa11.53□□□□□ -0.56
TPM3-203ENST00000312970 SOX12O15370 315 aa11.53□□□□□ -0.56
TPM3-203ENST00000312970 KCNQ2O43526 872 aa11.53□□□□□ -0.56
TPM3-203ENST00000312970 DDB1Q16531 1140 aa11.53□□□□□ -0.56
TPM3-203ENST00000312970 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.53□□□□□ -0.56
TPM3-203ENST00000312970 TMC1Q8TDI8 760 aa11.53□□□□□ -0.56
TPM3-203ENST00000312970 RGPD3A6NKT7 1758 aaPredicted RBP11.53□□□□□ -0.56
TPM3-203ENST00000312970 RGPD4Q7Z3J3 1758 aa11.53□□□□□ -0.56
TPM3-203ENST00000312970 WDR17Q8IZU2 1322 aa11.53□□□□□ -0.56
TPM3-203ENST00000312970 LRRC37A3O60309 1634 aa11.53□□□□□ -0.56
TPM3-203ENST00000312970 PIK3C2AO00443 1686 aa11.52□□□□□ -0.56
TPM3-203ENST00000312970 PEAK1Q9H792 1746 aa11.52□□□□□ -0.56
TPM3-203ENST00000312970 CSB-PGBD3P0DP91 1061 aa11.52□□□□□ -0.57
TPM3-203ENST00000312970 NBPF14Q5TI25 921 aa11.52□□□□□ -0.57
TPM3-203ENST00000312970 HDGFL2Q7Z4V5 671 aaPredicted RBP11.52□□□□□ -0.57
TPM3-203ENST00000312970 PUS7Q96PZ0 661 aaKnown RBP11.52□□□□□ -0.57
TPM3-203ENST00000312970 CDCA7Q9BWT1 371 aaPredicted RBP11.52□□□□□ -0.57
TPM3-203ENST00000312970 SLC12A5Q9H2X9 1139 aa11.52□□□□□ -0.57
TPM3-203ENST00000312970 SPON1Q9HCB6 807 aa11.52□□□□□ -0.57
TPM3-203ENST00000312970 PPP1R1BQ9UD71 204 aaPredicted RBP11.52□□□□□ -0.57
TPM3-203ENST00000312970 AKAP12Q02952 1782 aa11.51□□□□□ -0.57
TPM3-203ENST00000312970 CARD10Q9BWT7 1032 aa11.51□□□□□ -0.57
TPM3-203ENST00000312970 COL18A1P39060 1754 aa11.51□□□□□ -0.57
TPM3-203ENST00000312970 GOLGB1Q14789 3259 aaKnown RBP11.5□□□□□ -0.57
TPM3-203ENST00000312970 RGPD5Q99666 1765 aa11.5□□□□□ -0.57
TPM3-203ENST00000312970 DCAF8L1A6NGE4 600 aa11.5□□□□□ -0.57
TPM3-203ENST00000312970 TRIM26Q12899 539 aaPredicted RBP11.5□□□□□ -0.57
TPM3-203ENST00000312970 ZNF784Q8NCA9 323 aaPredicted RBP11.5□□□□□ -0.57
TPM3-203ENST00000312970 RNF216Q9NWF9 866 aaPredicted RBP11.5□□□□□ -0.57
TPM3-203ENST00000312970 TERF2IPQ9NYB0 399 aa11.5□□□□□ -0.57
TPM3-203ENST00000312970 EXOC5O00471 708 aa11.49□□□□□ -0.57
TPM3-203ENST00000312970 TPRNQ4KMQ1 711 aa11.49□□□□□ -0.57
TPM3-203ENST00000312970 NME9Q86XW9 330 aa11.49□□□□□ -0.57
TPM3-203ENST00000312970 USP31Q70CQ4 1352 aa11.49□□□□□ -0.57
TPM3-203ENST00000312970 OVOS2A0A0G2JMS6 1433 aa11.49□□□□□ -0.57
TPM3-203ENST00000312970 OVOS2A0A0J9YW53 1432 aa11.49□□□□□ -0.57
TPM3-203ENST00000312970 OVOS2Q6IE36 1432 aa11.49□□□□□ -0.57
TPM3-203ENST00000312970 PLSCR1O15162 318 aa11.48□□□□□ -0.57
TPM3-203ENST00000312970 MARCH10Q8NA82 808 aaPredicted RBP11.48□□□□□ -0.57
TPM3-203ENST00000312970 BCL11BQ9C0K0 894 aaPredicted RBP11.48□□□□□ -0.57
TPM3-203ENST00000312970 PDGFDQ9GZP0 370 aaPredicted RBP11.48□□□□□ -0.57
TPM3-203ENST00000312970 NINLQ9Y2I6 1382 aa11.48□□□□□ -0.57
TPM3-203ENST00000312970 CD163L1Q9NR16 1453 aa11.47□□□□□ -0.57
TPM3-203ENST00000312970 ST20-MTHFSA0A0A6YYL1 179 aa11.47□□□□□ -0.57
TPM3-203ENST00000312970 MYCNP04198 464 aaPredicted RBP11.47□□□□□ -0.57
TPM3-203ENST00000312970 NFAT5O94916 1531 aa11.46□□□□□ -0.57
TPM3-203ENST00000312970 CCDC7Q96M83 1385 aa11.46□□□□□ -0.57
TPM3-203ENST00000312970 VSIG10Q8N0Z9 540 aa11.46□□□□□ -0.57
TPM3-203ENST00000312970 TESK2Q96S53 571 aa11.46□□□□□ -0.57
TPM3-203ENST00000312970 CASZ1Q86V15 1759 aa11.46□□□□□ -0.58
TPM3-203ENST00000312970 MON2Q7Z3U7 1717 aa11.46□□□□□ -0.58
TPM3-203ENST00000312970 EDC4Q6P2E9 1401 aaKnown RBP11.45□□□□□ -0.58
TPM3-203ENST00000312970 SENP3-EIF4A1A0A087X0R7 540 aa11.45□□□□□ -0.58
TPM3-203ENST00000312970 IFFO2Q5TF58 517 aa11.45□□□□□ -0.58
TPM3-203ENST00000312970 NLRP2Q9NX02 1062 aa11.45□□□□□ -0.58
TPM3-203ENST00000312970 BCL9O00512 1426 aa11.44□□□□□ -0.58
TPM3-203ENST00000312970 PTF1AQ7RTS3 328 aa11.44□□□□□ -0.58
TPM3-203ENST00000312970 ABCC6O95255 1503 aa11.44□□□□□ -0.58
TPM3-203ENST00000312970 A0A1W2PP64 1363 aa11.43□□□□□ -0.58
TPM3-203ENST00000312970 CHD4Q14839 1912 aa11.43□□□□□ -0.58
TPM3-203ENST00000312970 ERBB3P21860 1342 aa11.43□□□□□ -0.58
TPM3-203ENST00000312970 C1QTNF8P60827 252 aa11.43□□□□□ -0.58
TPM3-203ENST00000312970 PROM2Q8N271 834 aa11.43□□□□□ -0.58
TPM3-203ENST00000312970 ANKRD24Q8TF21 1146 aa11.43□□□□□ -0.58
TPM3-203ENST00000312970 IP6K1Q92551 441 aa11.43□□□□□ -0.58
TPM3-203ENST00000312970 ANO8Q9HCE9 1232 aaPredicted RBP11.43□□□□□ -0.58
TPM3-203ENST00000312970 ZBTB7AO95365 584 aa11.42□□□□□ -0.58
TPM3-203ENST00000312970 IL2RBP14784 551 aa11.42□□□□□ -0.58
TPM3-203ENST00000312970 PTGER2P43116 358 aa11.42□□□□□ -0.58
TPM3-203ENST00000312970 COG3Q96JB2 828 aa11.42□□□□□ -0.58
TPM3-203ENST00000312970 USP54Q70EL1 1684 aa11.41□□□□□ -0.58
TPM3-203ENST00000312970 SLC4A2P04920 1241 aa11.41□□□□□ -0.58
TPM3-203ENST00000312970 TMF1P82094 1093 aa11.41□□□□□ -0.58
TPM3-203ENST00000312970 ATF5Q9Y2D1 282 aaPredicted RBP11.41□□□□□ -0.58
TPM3-203ENST00000312970 LTN1O94822 1766 aa11.41□□□□□ -0.58
TPM3-203ENST00000312970 MYOM1P52179 1685 aa11.4□□□□□ -0.58
TPM3-203ENST00000312970 NHSQ6T4R5 1651 aa11.4□□□□□ -0.58
TPM3-203ENST00000312970 TXNRD1Q16881 649 aa11.4□□□□□ -0.58
TPM3-203ENST00000312970 SYT17Q9BSW7 474 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms