RNA–Protein interactions for RNA: ENST00000258962.4

SRSF1-201, Transcript of serine and arginine rich splicing factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRSF1, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1-201ENST00000258962 CPDO75976 1380 aa23.4■■□□□ 1.34
SRSF1-201ENST00000258962 SOX12O15370 315 aa23.39■■□□□ 1.34
SRSF1-201ENST00000258962 ZRANB1Q9UGI0 708 aa23.39■■□□□ 1.34
SRSF1-201ENST00000258962 COL14A1Q05707 1796 aaKnown RBP23.39■■□□□ 1.34
SRSF1-201ENST00000258962 VPS72Q15906 364 aa23.38■■□□□ 1.33
SRSF1-201ENST00000258962 USP31Q70CQ4 1352 aa23.38■■□□□ 1.33
SRSF1-201ENST00000258962 FYB1O15117 783 aa23.38■■□□□ 1.33
SRSF1-201ENST00000258962 EVA1CP58658 441 aa23.37■■□□□ 1.33
SRSF1-201ENST00000258962 INSRP06213 1382 aa23.37■■□□□ 1.33
SRSF1-201ENST00000258962 NWD2Q9ULI1 1742 aa23.37■■□□□ 1.33
SRSF1-201ENST00000258962 ZBED9Q6R2W3 1325 aa23.36■■□□□ 1.33
SRSF1-201ENST00000258962 PLCH1Q4KWH8 1693 aa23.36■■□□□ 1.33
SRSF1-201ENST00000258962 BLMP54132 1417 aaPredicted RBP23.36■■□□□ 1.33
SRSF1-201ENST00000258962 GGNBP2Q9H3C7 697 aa23.36■■□□□ 1.33
SRSF1-201ENST00000258962 SLIT3O75094 1523 aa23.35■■□□□ 1.33
SRSF1-201ENST00000258962 STRN4Q9NRL3 753 aa23.35■■□□□ 1.33
SRSF1-201ENST00000258962 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.35■■□□□ 1.33
SRSF1-201ENST00000258962 CDK12Q9NYV4 1490 aaPredicted RBP23.34■■□□□ 1.33
SRSF1-201ENST00000258962 TNNT2P45379 298 aaPredicted RBP23.34■■□□□ 1.33
SRSF1-201ENST00000258962 COG3Q96JB2 828 aa23.34■■□□□ 1.33
SRSF1-201ENST00000258962 ARHGEF25Q86VW2 580 aa23.32■■□□□ 1.32
SRSF1-201ENST00000258962 AATKQ6ZMQ8 1374 aa23.31■■□□□ 1.32
SRSF1-201ENST00000258962 ADAMTS8Q9UP79 889 aa23.28■■□□□ 1.32
SRSF1-201ENST00000258962 RGS12O14924 1447 aa23.28■■□□□ 1.32
SRSF1-201ENST00000258962 SPATA31A5Q5VU36 1347 aa23.27■■□□□ 1.32
SRSF1-201ENST00000258962 SPATA31A7Q8IWB4 1347 aa23.27■■□□□ 1.32
SRSF1-201ENST00000258962 OVOS2A0A0J9YW53 1432 aa23.27■■□□□ 1.32
SRSF1-201ENST00000258962 OVOS2Q6IE36 1432 aa23.27■■□□□ 1.32
SRSF1-201ENST00000258962 MTHFSP49914 203 aa23.27■■□□□ 1.32
SRSF1-201ENST00000258962 WDR43Q15061 677 aaKnown RBP eCLIP23.27■■□□□ 1.32
SRSF1-201ENST00000258962 CAMTA1Q9Y6Y1 1673 aa23.27■■□□□ 1.32
SRSF1-201ENST00000258962 A0A0G2JS52 829 aa23.26■■□□□ 1.31
SRSF1-201ENST00000258962 MYT1Q01538 1121 aa23.26■■□□□ 1.31
SRSF1-201ENST00000258962 NRAPQ86VF7 1730 aa23.25■■□□□ 1.31
SRSF1-201ENST00000258962 MAP2P11137 1827 aaKnown RBP23.25■■□□□ 1.31
SRSF1-201ENST00000258962 GTF3C3Q9Y5Q9 886 aa23.25■■□□□ 1.31
SRSF1-201ENST00000258962 NFAT5O94916 1531 aa23.25■■□□□ 1.31
SRSF1-201ENST00000258962 SENP3-EIF4A1A0A087X0R7 540 aa23.24■■□□□ 1.31
SRSF1-201ENST00000258962 FAM98CQ17RN3 349 aaKnown RBP23.24■■□□□ 1.31
SRSF1-201ENST00000258962 LARP1Q6PKG0 1096 aaKnown RBP23.24■■□□□ 1.31
SRSF1-201ENST00000258962 USP35Q9P2H5 1018 aa23.24■■□□□ 1.31
SRSF1-201ENST00000258962 AXIN2Q9Y2T1 843 aa23.24■■□□□ 1.31
SRSF1-201ENST00000258962 COL3A1P02461 1466 aaPredicted RBP23.24■■□□□ 1.31
SRSF1-201ENST00000258962 USP54Q70EL1 1684 aa23.24■■□□□ 1.31
SRSF1-201ENST00000258962 GLI3P10071 1580 aa23.24■■□□□ 1.31
SRSF1-201ENST00000258962 ONECUT3O60422 494 aaPredicted RBP23.23■■□□□ 1.31
SRSF1-201ENST00000258962 SEPT12Q8IYM1 358 aa23.23■■□□□ 1.31
SRSF1-201ENST00000258962 SPATA31A1Q5TZJ5 1347 aa23.23■■□□□ 1.31
SRSF1-201ENST00000258962 LMO7Q8WWI1 1683 aa23.22■■□□□ 1.31
SRSF1-201ENST00000258962 CSB-PGBD3P0DP91 1061 aa23.22■■□□□ 1.31
SRSF1-201ENST00000258962 COL5A2P05997 1499 aaPredicted RBP23.21■■□□□ 1.31
SRSF1-201ENST00000258962 TOM1L2Q6ZVM7 507 aa23.21■■□□□ 1.31
SRSF1-201ENST00000258962 AMPHP49418 695 aa23.19■■□□□ 1.3
SRSF1-201ENST00000258962 TCP11L2Q8N4U5 519 aa23.19■■□□□ 1.3
SRSF1-201ENST00000258962 CFAP53Q96M91 514 aa23.19■■□□□ 1.3
SRSF1-201ENST00000258962 WDR17Q8IZU2 1322 aa23.18■■□□□ 1.3
SRSF1-201ENST00000258962 FBLN1P23142 703 aa23.18■■□□□ 1.3
SRSF1-201ENST00000258962 THRAP3Q9Y2W1 955 aaKnown RBP23.18■■□□□ 1.3
SRSF1-201ENST00000258962 COL18A1P39060 1754 aa23.18■■□□□ 1.3
SRSF1-201ENST00000258962 SMG6Q86US8 1419 aaKnown RBP23.17■■□□□ 1.3
SRSF1-201ENST00000258962 MAP3K19Q56UN5 1328 aa23.17■■□□□ 1.3
SRSF1-201ENST00000258962 CRB1P82279 1406 aa23.17■■□□□ 1.3
SRSF1-201ENST00000258962 IP6K1Q92551 441 aa23.17■■□□□ 1.3
SRSF1-201ENST00000258962 BARGINQ6ZT62 677 aa23.16■■□□□ 1.3
SRSF1-201ENST00000258962 ABCC6O95255 1503 aa23.16■■□□□ 1.3
SRSF1-201ENST00000258962 RRS1Q15050 365 aaKnown RBP23.15■■□□□ 1.3
SRSF1-201ENST00000258962 KRT27Q7Z3Y8 459 aa23.14■■□□□ 1.3
SRSF1-201ENST00000258962 POLKQ9UBT6 870 aa23.14■■□□□ 1.3
SRSF1-201ENST00000258962 ANKRD24Q8TF21 1146 aa23.13■■□□□ 1.29
SRSF1-201ENST00000258962 LTN1O94822 1766 aa23.13■■□□□ 1.29
SRSF1-201ENST00000258962 CCDC146Q8IYE0 955 aa23.13■■□□□ 1.29
SRSF1-201ENST00000258962 CARD10Q9BWT7 1032 aa23.13■■□□□ 1.29
SRSF1-201ENST00000258962 NLRP2Q9NX02 1062 aa23.13■■□□□ 1.29
SRSF1-201ENST00000258962 HOXC9P31274 260 aa23.12■■□□□ 1.29
SRSF1-201ENST00000258962 ERBB3P21860 1342 aa23.11■■□□□ 1.29
SRSF1-201ENST00000258962 RGPD5Q99666 1765 aa23.11■■□□□ 1.29
SRSF1-201ENST00000258962 UPF1Q92900 1129 aaKnown RBP eCLIP23.11■■□□□ 1.291e-28■□□□□ 8.2
SRSF1-201ENST00000258962 LTV1Q96GA3 475 aaPredicted RBP23.11■■□□□ 1.29
SRSF1-201ENST00000258962 SALL2Q9Y467 1007 aaPredicted RBP23.11■■□□□ 1.29
SRSF1-201ENST00000258962 PPM1GO15355 546 aaPredicted RBP23.08■■□□□ 1.29
SRSF1-201ENST00000258962 EMILIN1Q9Y6C2 1016 aa23.08■■□□□ 1.29
SRSF1-201ENST00000258962 PEAK1Q9H792 1746 aa23.08■■□□□ 1.29
SRSF1-201ENST00000258962 RTL1A6NKG5 1358 aa23.08■■□□□ 1.29
SRSF1-201ENST00000258962 PDE3BQ13370 1112 aa23.08■■□□□ 1.28
SRSF1-201ENST00000258962 CDCA7Q9BWT1 371 aaPredicted RBP23.08■■□□□ 1.28
SRSF1-201ENST00000258962 NUDCQ9Y266 331 aa23.07■■□□□ 1.28
SRSF1-201ENST00000258962 KIF24Q5T7B8 1368 aa23.06■■□□□ 1.28
SRSF1-201ENST00000258962 BRWD3Q6RI45 1802 aa23.05■■□□□ 1.28
SRSF1-201ENST00000258962 APAF1O14727 1248 aa23.05■■□□□ 1.28
SRSF1-201ENST00000258962 FLT4P35916 1363 aa23.05■■□□□ 1.28
SRSF1-201ENST00000258962 DIAPH1O60610 1272 aaKnown RBP23.04■■□□□ 1.28
SRSF1-201ENST00000258962 ZNF521Q96K83 1311 aa23.04■■□□□ 1.28
SRSF1-201ENST00000258962 THSD7AQ9UPZ6 1657 aa23.04■■□□□ 1.28
SRSF1-201ENST00000258962 U2AF1L5P0DN76 240 aaPredicted RBP23.03■■□□□ 1.28
SRSF1-201ENST00000258962 U2AF1Q01081 240 aaKnown RBP eCLIP23.03■■□□□ 1.284e-9■■□□□ 14.5
SRSF1-201ENST00000258962 HSP90AB2PQ58FF8 381 aa23.03■■□□□ 1.28
SRSF1-201ENST00000258962 DDB1Q16531 1140 aa23.03■■□□□ 1.28
SRSF1-201ENST00000258962 CCDC125Q86Z20 511 aa23.03■■□□□ 1.28
SRSF1-201ENST00000258962 RUNDC1Q96C34 613 aa23.03■■□□□ 1.28
SRSF1-201ENST00000258962 U2SURPO15042 1029 aaKnown RBP23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms