RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GRM6O15303 877 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 ADAM12O43184 909 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 TRIM13O60858 407 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 TBL1XO60907 577 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 SOAT2O75908 522 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 CNTN5O94779 1100 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 VAPBO95292 243 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 PAPLNO95428 1278 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 MT-CYBP00156 380 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 ALDOAP04075 364 aaKnown RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 ASLP04424 464 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 ERVK-10P10266 1014 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 MYL2P10916 166 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 CPA3P15088 417 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 RPL17P18621 184 aaKnown RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 LPOP22079 712 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 SERPINA4P29622 427 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 CA8P35219 290 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 GRIA1P42261 906 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 ARCN1P48444 511 aaKnown RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 KCNQ1P51787 676 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 CLCN4P51793 760 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 ARFIP2P53365 341 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 RABGGTBP53611 331 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 EPHB1P54762 984 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 ATP6V0D1P61421 351 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 RHOAP61586 193 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 SNRPD1P62314 119 aaKnown RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 POLR2LP62875 67 aaKnown RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 GALNT1Q10472 559 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 MSLNQ13421 630 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 PDE1CQ14123 709 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 ZKSCAN8Q15776 578 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 TCTN1Q2MV58 587 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 FSCBQ5H9T9 825 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 CFAP157Q5JU67 520 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 SH2D4BQ5SQS7 431 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 CERCAMQ5T4B2 595 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 ARMC12Q5T9G4 340 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 LIPMQ5VYY2 423 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 RNF219Q5W0B1 726 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 ZNF470Q6ECI4 717 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 DENND5AQ6IQ26 1287 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 OTOP3Q7RTS5 596 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 OTOP2Q7RTS6 562 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 GLT6D1Q7Z4J2 308 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 RAB44Q7Z6P3 723 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 UBE2Q1Q7Z7E8 422 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 CILP2Q8IUL8 1156 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 C10orf67Q8IYJ2 551 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 DCLK2Q8N568 766 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 PCDH20Q8N6Y1 951 aaKnown RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 TDRD5Q8NAT2 981 aaKnown RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 KLHL23Q8NBE8 558 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 SPATA22Q8NHS9 363 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 CFAP61Q8NHU2 1237 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 ARRDC2Q8TBH0 407 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 PIWIL2Q8TC59 973 aaKnown RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 GPR152Q8TDT2 470 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 USP33Q8TEY7 942 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 DDI1Q8WTU0 396 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 MFSD3Q96ES6 412 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 LRIG1Q96JA1 1093 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 PRICKLE1Q96MT3 831 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 ZNF641Q96N77 438 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 MCMBPQ9BTE3 642 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 SPON2Q9BUD6 331 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 TDRD1Q9BXT4 1180 aaKnown RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 MMADHCQ9H3L0 296 aaPredicted RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 ATXN3LQ9H3M9 355 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 PLAC1Q9HBJ0 212 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 NMRAL1Q9HBL8 299 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 MAGEE1Q9HCI5 957 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 CHRAC1Q9NRG0 131 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 IARS2Q9NSE4 1012 aaKnown RBP7.57□□□□□ -1.2
VPS39-204ENST00000561818 OBP2AQ9NY56 170 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 SLC12A4Q9UP95 1085 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 SNX10Q9Y5X0 201 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 HTTP42858 3142 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 KIAA1671Q9BY89 1806 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 CHD5Q8TDI0 1954 aa7.57□□□□□ -1.2
VPS39-204ENST00000561818 FAM95CA0A1B0GW59 222 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 C2orf71A6NGG8 1288 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 J3KR12 359 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 MYO1CO00159 1063 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 CBX4O00257 560 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 QSOX1O00391 747 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 USP12O75317 370 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 SNNO75324 88 aaPredicted RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 TMCC1O94876 653 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 KLHL2O95198 593 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 GSRP00390 522 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 PROCP04070 461 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 ATXN1LP0C7T5 689 aaKnown RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 CR2P20023 1033 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 MAPK9P45984 424 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 RECQLP46063 649 aaPredicted RBP7.56□□□□□ -1.2
VPS39-204ENST00000561818 SUOXP51687 545 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 DNAJB13P59910 316 aa7.56□□□□□ -1.2
VPS39-204ENST00000561818 HTRA3P83110 453 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms