RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SPATA31A5Q5VU36 1347 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 SPATA31A6Q5VVP1 1343 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 SPATA31A7Q8IWB4 1347 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 DHRS12A0PJE2 317 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 TFECO14948 347 aaPredicted RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 GAS2O43903 313 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 ALDOAP04075 364 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 JUNP05412 331 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 SHMT2P34897 504 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 GARSP41250 739 aaKnown RBP12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 NPTX2P47972 431 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 MAPK12P53778 367 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 GJA9P57773 515 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 MPP1Q00013 466 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 ACAP2Q15057 778 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 ESCO2Q56NI9 601 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 AGMOQ6ZNB7 445 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 HORMAD1Q86X24 394 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 PLD3Q8IV08 490 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 LACC1Q8IV20 430 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 EID3Q8N140 333 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 PACRGLQ8N7B6 248 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 ST6GAL2Q96JF0 529 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 MCEEQ96PE7 176 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 EYA3Q99504 573 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 UNC93B1Q9H1C4 597 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 MCCC2Q9HCC0 563 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 ZBTB26Q9HCK0 441 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 IP6K2Q9UHH9 426 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 MAN2B2Q9Y2E5 1009 aa12.13□□□□□ -0.47
LIMCH1-213ENST00000511496 FAM86B1E9PN63 330 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 K7ENM7 598 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 SERPINI2O75830 405 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 CLEC2LP0C7M8 214 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 SLC7A2P52569 658 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 TYSND1Q2T9J0 566 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 C5orf22Q49AR2 442 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 YIF1BQ5BJH7 314 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 METTL2BQ6P1Q9 378 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 GADL1Q6ZQY3 521 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 OR13J1Q8NGT2 312 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 NSUN6Q8TEA1 469 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 HDAC10Q969S8 669 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 UHRF1Q96T88 793 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 POPDC2Q9HBU9 364 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 TUFT1Q9NNX1 390 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 IARS2Q9NSE4 1012 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 GABBR1Q9UBS5 961 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 DCDC2Q9UHG0 476 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 ANKRD36CQ5JPF3 1778 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 C16orf96A6NNT2 1141 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 NFIBO00712 420 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 SLC9A3R1O14745 358 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 SGTAO43765 313 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 PGRP06401 933 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 F7P08709 466 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 GSTM2P28161 218 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 EVI2BP34910 448 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 ARHGDIAP52565 204 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 SBK1Q52WX2 424 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 NPNTQ6UXI9 565 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 CMC1Q7Z7K0 106 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 SLC9A9Q8IVB4 645 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 NLGN4XQ8N0W4 816 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 MPP5Q8N3R9 675 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 GAD1Q99259 594 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 EIF2AK1Q9BQI3 630 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 ASPSCR1Q9BZE9 553 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 LTB4R2Q9NPC1 389 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 MRPL40Q9NQ50 206 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 NUP50Q9UKX7 468 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 DIP2BQ9P265 1576 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 F5H423 210 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 TADA2AO75478 443 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 NTRK1P04629 796 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 YES1P07947 543 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 PRKCHP24723 683 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 ATP5OP48047 213 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 SYCE2Q6PIF2 218 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 DPY19L3Q6ZPD9 716 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 MON1BQ7L1V2 547 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 TTLQ8NG68 377 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 FAR1Q8WVX9 515 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 RANGRFQ9HD47 186 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 SPAG4Q9NPE6 437 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 FBXO40Q9UH90 709 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 CDYLQ9Y232 598 aa12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 COL1A1P02452 1464 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-213ENST00000511496 I3L521 148 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 NRP2O60462 931 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 PTTG1O95997 202 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 ATF6P18850 670 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 GRIK1P39086 918 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 CD83Q01151 205 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 TARDBPQ13148 414 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 SHEQ5VZ18 495 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 NOXA1Q86UR1 476 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 SVOPQ8N4V2 548 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 TTLL6Q8N841 843 aa12.11□□□□□ -0.47
LIMCH1-213ENST00000511496 TOE1Q96GM8 510 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms