RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 A0A087X0T9 212 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 MYADML2A6NDP7 307 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 SSX5O60225 188 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 ZNF3P17036 446 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 ABCG1P45844 678 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 RGS7P49802 495 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 GNA12Q03113 381 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 VAC14Q08AM6 782 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 HNRNPDQ14103 355 aaKnown RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 GPR107Q5VW38 600 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 JAMLQ86YT9 394 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 LURAP1LQ8IV03 231 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 MCOLN2Q8IZK6 566 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 PCYOX1LQ8NBM8 494 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 ACTRT2Q8TDY3 377 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 LPPQ93052 612 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 ACBD6Q9BR61 282 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 TMEM120AQ9BXJ8 343 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 CATSPERBQ9H7T0 1116 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 TOR4AQ9NXH8 423 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 HNRNPCL2B2RXH8 293 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 MICAL2O94851 1124 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 TFAP2AP05549 437 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 RARGP13631 454 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 CTNNB1P35222 781 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 RAP1GAPP47736 663 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 MGAT5Q09328 741 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 CSTF3Q12996 717 aaKnown RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 PDK2Q15119 407 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 WSCD1Q658N2 575 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 TTC33Q6PID6 262 aaPredicted RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 PCGF5Q86SE9 256 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 PRPF39Q86UA1 669 aaKnown RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 SLC47A2Q86VL8 602 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 CARNMT1Q8N4J0 409 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 TRPV1Q8NER1 839 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 UBA3Q8TBC4 463 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 BAP1Q92560 729 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 MCEEQ96PE7 176 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 TRABDQ9H4I3 376 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 VRTNQ9H8Y1 702 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 IL23AQ9NPF7 189 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 FAM8A1Q9UBU6 413 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 PADI4Q9UM07 663 aa9.89□□□□□ -0.83
USP54-205ENST00000424265 MRPS7Q9Y2R9 242 aaKnown RBP9.89□□□□□ -0.83
USP54-205ENST00000424265 TEX51A0A1B0GUA7 166 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 IQCF3P0C7M6 154 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 NPR3P17342 541 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 CHRNA3P32297 505 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 HARS2P49590 506 aaKnown RBP9.88□□□□□ -0.83
USP54-205ENST00000424265 PRAMEP78395 509 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 RHAGQ02094 409 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 CAV1Q03135 178 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 TBCCQ15814 346 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 HMBOX1Q6NT76 420 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 PHF13Q86YI8 300 aaPredicted RBP9.88□□□□□ -0.83
USP54-205ENST00000424265 ZNF786Q8N393 782 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 FAM109AQ8N4B1 249 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 FBXO22Q8NEZ5 403 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 C12orf43Q96C57 262 aaKnown RBP9.88□□□□□ -0.83
USP54-205ENST00000424265 TM9SF2Q99805 663 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 TUBA1CQ9BQE3 449 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 ZNF696Q9H7X3 374 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 ZDHHC7Q9NXF8 308 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 NUAK1O60285 661 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 KRT37O76014 449 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 CSH1P0DML2 217 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 CSH2P0DML3 217 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 RBP3P10745 1247 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 CD9P21926 228 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 PROZP22891 400 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 CYP2C18P33260 490 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 PLIN5Q00G26 463 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 CHRNEQ04844 493 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 BNIP3Q12983 259 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 TOMM20Q15388 145 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 PSMD5Q16401 504 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 ZNF600Q6ZNG1 722 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 MRPL10Q7Z7H8 261 aaKnown RBP9.88□□□□□ -0.83
USP54-205ENST00000424265 ADCK1Q86TW2 530 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 METTL3Q86U44 580 aaKnown RBP9.88□□□□□ -0.83
USP54-205ENST00000424265 MARVELD2Q8N4S9 558 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 SLC30A5Q8TAD4 765 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 FBXO25Q8TCJ0 367 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 HCAR2Q8TDS4 363 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 EFHD1Q9BUP0 239 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 TLE6Q9H808 572 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 MINDY3Q9H8M7 445 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 NCKIPSDQ9NZQ3 722 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 ZMYM5Q9UJ78 669 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 MAGED2Q9UNF1 606 aaPredicted RBP9.88□□□□□ -0.83
USP54-205ENST00000424265 LOXHD1Q8IVV2 1947 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 CILPO75339 1184 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 CCNA2P20248 432 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 RAD23AP54725 363 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 ACTR3P61158 418 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 ATP6V0D1P61421 351 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 CDK16Q00536 496 aa9.88□□□□□ -0.83
USP54-205ENST00000424265 JPH3Q8WXH2 748 aaPredicted RBP9.88□□□□□ -0.83
USP54-205ENST00000424265 PIK3R3Q92569 461 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms