RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 MRPL46Q9H2W6 279 aaKnown RBP14.99□□□□□ -0.01
CUX1-215ENST00000556210 MTMR10Q9NXD2 777 aa14.99□□□□□ -0.01
CUX1-215ENST00000556210 J3KR12 359 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 PSMD3O43242 534 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 PRKAR2AP13861 404 aaKnown RBP14.98□□□□□ -0.01
CUX1-215ENST00000556210 TAF10Q12962 218 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 PCLAFQ15004 111 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 MIER2Q8N344 545 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 TSPAN17Q96FV3 270 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 SPATA16Q9BXB7 569 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 CNTN3Q9P232 1028 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 GIMAP2Q9UG22 337 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 DERAQ9Y315 318 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 COL1A2P08123 1366 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 A0A1B0GVG6 124 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 KCNU1A8MYU2 1149 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 DPYSL4O14531 572 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 PQBP1O60828 265 aaKnown RBP14.98□□□□□ -0.01
CUX1-215ENST00000556210 GABBR2O75899 941 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 F2P00734 622 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 ITGB1P05556 798 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 PYGLP06737 847 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 UQCRBP14927 111 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 WEE1P30291 646 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 AQP4P55087 323 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 CCL23P55773 120 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 RBM20Q5T481 1227 aaKnown RBP14.98□□□□□ -0.01
CUX1-215ENST00000556210 LINGO4Q6UY18 593 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 RBM44Q6ZP01 1051 aaKnown RBP14.98□□□□□ -0.01
CUX1-215ENST00000556210 SKA1Q96BD8 255 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 PTCD3Q96EY7 689 aaKnown RBP14.98□□□□□ -0.01
CUX1-215ENST00000556210 GBA3Q9H227 469 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 FLRT1Q9NZU1 646 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 CDH22Q9UJ99 828 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 TIMM22Q9Y584 194 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 SLC30A1Q9Y6M5 507 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 FOLH1Q04609 750 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 MRNIPQ6NTE8 343 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 PKN3Q6P5Z2 889 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 SATL1Q86VE3 508 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 PTGR2Q8N8N7 351 aaPredicted RBP14.98□□□□□ -0.01
CUX1-215ENST00000556210 C3orf58Q8NDZ4 430 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 ACMSDQ8TDX5 336 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 RHOJQ9H4E5 214 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 NME7Q9Y5B8 376 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 PCDHB7Q9Y5E2 793 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 CEP350Q5VT06 3117 aa14.98□□□□□ -0.01
CUX1-215ENST00000556210 SPATA31D3P0C874 917 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 ETV4P43268 484 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 SLC10A7Q0GE19 358 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 TRIM32Q13049 653 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 LIPMQ5VYY2 423 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 SPATA31D4Q6ZUB0 917 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 DNAJB14Q8TBM8 379 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 HEXDCQ8WVB3 486 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 TRIM62Q9BVG3 475 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 NSMCE4AQ9NXX6 385 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 KANSL3Q9P2N6 904 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 ZMYM5Q9UJ78 669 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.97□□□□□ -0.01
CUX1-215ENST00000556210 ZBBXA8MT70 800 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 APOA4P06727 396 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 ME2P23368 584 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 SLC1A2P43004 574 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 ALDH1A3P47895 512 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 IMPG1Q17R60 797 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 PTRHD1Q6GMV3 140 aaKnown RBP14.97□□□□□ -0.01
CUX1-215ENST00000556210 TIGD7Q6NT04 549 aaPredicted RBP14.97□□□□□ -0.01
CUX1-215ENST00000556210 DENND1CQ8IV53 801 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 CATSPER1Q8NEC5 780 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 TMEM174Q8WUU8 243 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 DNAJC1Q96KC8 554 aaKnown RBP14.97□□□□□ -0.01
CUX1-215ENST00000556210 SERPINB11Q96P15 392 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 HAUS8Q9BT25 410 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 C1orf50Q9BV19 199 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 NFKBIZQ9BYH8 718 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 PCDHAC1Q9H158 963 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 ATP13A1Q9HD20 1204 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.97□□□□□ -0.011e-6■■■■□ 23.3
CUX1-215ENST00000556210 PCDHB5Q9Y5E4 795 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 KLHL33A6NCF5 533 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 TRPC5OSA6NMA1 111 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 E9PAM4 449 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 MRASO14807 208 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 ALDH2P05091 517 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 SERPINF2P08697 491 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 MLNP12872 115 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 FCGRTP55899 365 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 OTUD3Q5T2D3 398 aaPredicted RBP14.97□□□□□ -0.01
CUX1-215ENST00000556210 C14orf80Q86SX3 495 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 RNF180Q86T96 592 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 PIM3Q86V86 326 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 HMCESQ96FZ2 354 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 CCDC90BQ9GZT6 254 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 CHCHD3Q9NX63 227 aaKnown RBP14.97□□□□□ -0.01
CUX1-215ENST00000556210 GALNT8Q9NY28 637 aa14.97□□□□□ -0.01
CUX1-215ENST00000556210 SBF2Q86WG5 1849 aa14.96□□□□□ -0.01
CUX1-215ENST00000556210 TBKBP1A7MCY6 615 aa14.96□□□□□ -0.01
CUX1-215ENST00000556210 BTN3A1O00481 513 aa14.96□□□□□ -0.01
CUX1-215ENST00000556210 AURKAO14965 403 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms